RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 EYA3Q99504 573 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 FUZQ9BT04 418 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.5□□□□□ -1.69
VPS29-205ENST00000548539 USP44Q9H0E7 712 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 INTS2Q9H0H0 1204 aaKnown RBP4.5□□□□□ -1.69
VPS29-205ENST00000548539 SLC25A18Q9H1K4 315 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 SLC22A11Q9NSA0 550 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 BLOC1S4Q9NUP1 217 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 GAR1Q9NY12 217 aaKnown RBP4.5□□□□□ -1.69
VPS29-205ENST00000548539 ORC3Q9UBD5 711 aaPredicted RBP4.5□□□□□ -1.69
VPS29-205ENST00000548539 CD207Q9UJ71 328 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 PKP3Q9Y446 797 aa4.5□□□□□ -1.69
VPS29-205ENST00000548539 AOX1Q06278 1338 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 TCRBV7S3A2A0A539 114 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 POC1B-GALNT4F8VUJ3 575 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 UBE2Q2LH0YL09 131 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 GUCY1B2O75343 617 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 BAIAP3O94812 1187 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 ENO1P06733 434 aaKnown RBP4.49□□□□□ -1.69
VPS29-205ENST00000548539 TGM2P21980 687 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 KELP23276 732 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 BDNFP23560 247 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 TYK2P29597 1187 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 MAN1A1P33908 653 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 CCR9P51686 369 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 CDH15P55291 814 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 SLC10A2Q12908 348 aaPredicted RBP4.49□□□□□ -1.69
VPS29-205ENST00000548539 MTA1Q13330 715 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 IL13RA2Q14627 380 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 SEC23BQ15437 767 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 ETFDHQ16134 617 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 GLE1Q53GS7 698 aaKnown RBP4.49□□□□□ -1.69
VPS29-205ENST00000548539 NAPEPLDQ6IQ20 393 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 RTL10Q7L3V2 364 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 TDRD7Q8NHU6 1098 aaKnown RBP4.49□□□□□ -1.69
VPS29-205ENST00000548539 RFWD2Q8NHY2 731 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 FAM110DQ8TAY7 271 aaPredicted RBP4.49□□□□□ -1.69
VPS29-205ENST00000548539 RFFLQ8WZ73 363 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 IP6K1Q92551 441 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 KIF1BPQ96EK5 621 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 CD180Q99467 661 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 BARD1Q99728 777 aaKnown RBP4.49□□□□□ -1.69
VPS29-205ENST00000548539 LBHD1Q9BQE6 289 aaPredicted RBP4.49□□□□□ -1.69
VPS29-205ENST00000548539 LMAN2LQ9H0V9 348 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 HDAC6Q9UBN7 1215 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 ZNF580Q9UK33 172 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 NAALADL1Q9UQQ1 740 aa4.49□□□□□ -1.69
VPS29-205ENST00000548539 C17orf100A8MU93 164 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 TMEM232C9JQI7 657 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 MCIDASD6RGH6 385 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 PER2O15055 1255 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 CCNT1O60563 726 aaKnown RBP4.48□□□□□ -1.69
VPS29-205ENST00000548539 TULP3O75386 442 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 F9P00740 461 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 HOXB9P17482 250 aaPredicted RBP4.48□□□□□ -1.69
VPS29-205ENST00000548539 PTPN9P43378 593 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 HARS2P49590 506 aaKnown RBP4.48□□□□□ -1.69
VPS29-205ENST00000548539 ADPRHP54922 357 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 FOXG1P55316 489 aaPredicted RBP4.48□□□□□ -1.69
VPS29-205ENST00000548539 YPEL5P62699 121 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 ZBTB16Q05516 673 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 KLF9Q13886 244 aaPredicted RBP4.48□□□□□ -1.69
VPS29-205ENST00000548539 CERKLQ49MI3 558 aaPredicted RBP4.48□□□□□ -1.69
VPS29-205ENST00000548539 FBXO43Q4G163 708 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 TMEM63BQ5T3F8 832 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 PRAMEF17Q5VTA0 474 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 PCGF5Q86SE9 256 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 GALNT7Q86SF2 657 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 MON1AQ86VX9 555 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 ARMC8Q8IUR7 673 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 EXD3Q8N9H8 876 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 ANKRD52Q8NB46 1076 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 PIGKQ92643 395 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 FCRL5Q96RD9 977 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 CLSTN3Q9BQT9 956 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 CHCHD6Q9BRQ6 235 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 EFHD1Q9BUP0 239 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 TM2D2Q9BX73 214 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 SLC32A1Q9H598 525 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 TTC12Q9H892 705 aaPredicted RBP4.48□□□□□ -1.69
VPS29-205ENST00000548539 VEZTQ9HBM0 779 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 MLXIPLQ9NP71 852 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 TMEM248Q9NWD8 314 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 UPB1Q9UBR1 384 aa4.48□□□□□ -1.69
VPS29-205ENST00000548539 ITIH6Q6UXX5 1313 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 CXorf65A6NEN9 183 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 TSPAN4O14817 238 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 CBX6O95503 412 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 NTN1O95631 604 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 URODP06132 367 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 CYP2A6P11509 494 aaPredicted RBP4.47□□□□□ -1.69
VPS29-205ENST00000548539 AKR1A1P14550 325 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 CASP2P42575 452 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 SOX2P48431 317 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 OAZ1P54368 228 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 CAMK1Q14012 370 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 ZNF474Q6S9Z5 364 aaPredicted RBP4.47□□□□□ -1.69
VPS29-205ENST00000548539 C4orf50Q6ZRC1 276 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 UEVLDQ8IX04 471 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 CNTROBQ8N137 903 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms