RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZNF211Q13398 564 aaPredicted RBP13.95□□□□□ -0.18
SS18-204ENST00000539244 AUHQ13825 339 aaKnown RBP13.95□□□□□ -0.18
SS18-204ENST00000539244 TAF5Q15542 800 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 DLG2Q15700 870 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 C5orf22Q49AR2 442 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 EFHC1Q5JVL4 640 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 SMYD5Q6GMV2 418 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 ISM2Q6H9L7 571 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 KLHL10Q6JEL2 608 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 NEK5Q6P3R8 708 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 DEFB106AQ8N104 65 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 SH2D3CQ8N5H7 860 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 DCBLD1Q8N8Z6 715 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 OR52K2Q8NGK3 314 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 BAP1Q92560 729 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 FAM81BQ96LP2 452 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 RPRD1AQ96P16 312 aaPredicted RBP13.95□□□□□ -0.18
SS18-204ENST00000539244 FAM204AQ9H8W3 233 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 UBE2TQ9NPD8 197 aaPredicted RBP13.95□□□□□ -0.18
SS18-204ENST00000539244 ACP6Q9NPH0 428 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 DDIT4Q9NX09 232 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 CLCA2Q9UQC9 943 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 HS3ST2Q9Y278 367 aa13.95□□□□□ -0.18
SS18-204ENST00000539244 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.95□□□□□ -0.18
SS18-204ENST00000539244 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.94□□□□□ -0.18
SS18-204ENST00000539244 BECN2A8MW95 431 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 TRIM38O00635 465 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 THAP12O43422 761 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 CLDN11O75508 207 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 GLDCP23378 1020 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 NUMBP49757 651 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 IRAK1P51617 712 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 ZNF177Q13360 481 aaPredicted RBP13.94□□□□□ -0.18
SS18-204ENST00000539244 MORC3Q14149 939 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 ACCSLQ4AC99 568 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 PIP5KL1Q5T9C9 394 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 Q6ZVU0 165 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 SLC25A45Q8N413 288 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 WDTC1Q8N5D0 677 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 FGF11Q92914 225 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 CPXM1Q96SM3 734 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 HELZ2Q9BYK8 2649 aaKnown RBP13.94□□□□□ -0.18
SS18-204ENST00000539244 PCDHGC3Q9UN70 934 aa13.94□□□□□ -0.18
SS18-204ENST00000539244 SIGLEC6O43699 453 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 BRINP1O60477 761 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 SDC3O75056 442 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 C1QL1O75973 258 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 ACTN2P35609 894 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 CDH4P55283 916 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 C19orf57Q0VDD7 668 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 TRIM65Q6PJ69 517 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 OLFML1Q6UWY5 402 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 ERICH1Q86X53 443 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 OR4C6Q8NH72 309 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 SLC39A7Q92504 469 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 RNF34Q969K3 372 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 KLHDC7BQ96G42 594 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 PPP1R13BQ96KQ4 1090 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 FCRL3Q96P31 734 aaPredicted RBP13.93□□□□□ -0.18
SS18-204ENST00000539244 KLHL11Q9NVR0 708 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 VPS28Q9UK41 221 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 VANGL2Q9ULK5 521 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 CTNND2Q9UQB3 1225 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 RAI2Q9Y5P3 530 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 HS3ST4Q9Y661 456 aa13.93□□□□□ -0.18
SS18-204ENST00000539244 KALRNO60229 2985 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 PAGE1O75459 146 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 CTSLP07711 333 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 THEGLP0DJG4 465 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 GIMD1P0DJR0 217 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 SRCP12931 536 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 ZNF18P17022 549 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 DGKAP23743 735 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 CCDC15Q0P6D6 951 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 KCNMA1Q12791 1236 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 PAK1Q13153 545 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 TBC1D25Q3MII6 688 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 POM121L1PQ3SYA9 428 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 C11orf57Q6ZUT1 292 aaPredicted RBP13.92□□□□□ -0.18
SS18-204ENST00000539244 SLC26A9Q7LBE3 791 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 HORMAD1Q86X24 394 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 TMIEQ8NEW7 156 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 ZNF397Q8NF99 534 aaPredicted RBP13.92□□□□□ -0.18
SS18-204ENST00000539244 OR2A12Q8NGT7 310 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 SHC3Q92529 594 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 IFT43Q96FT9 208 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 PSMB7Q99436 277 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 SRRTQ9BXP5 876 aaKnown RBP13.92□□□□□ -0.18
SS18-204ENST00000539244 CA5BQ9Y2D0 317 aa13.92□□□□□ -0.18
SS18-204ENST00000539244 TDRD6O60522 2096 aaKnown RBP13.92□□□□□ -0.18
SS18-204ENST00000539244 SYNJ2BP-COX16A0A087WUM0 186 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 TEX51A0A1B0GUA7 166 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 DAB1O75553 588 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 MT-CO1P00395 513 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 MT-CO3P00414 261 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 PRB1P04280 392 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 CKMT1AP12532 417 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 HNRNPA2B1P22626 353 aaKnown RBP13.91□□□□□ -0.18
SS18-204ENST00000539244 CHRNA3P32297 505 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 NOS2P35228 1153 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms