RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ACE2Q9BYF1 805 aaPredicted RBP30.3■■■□□ 2.44
LIMCH1-211ENST00000509638 NCAM2O15394 837 aa30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 CST8O60676 142 aa30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 MAP3K6O95382 1288 aa30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 ASLP04424 464 aa30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 ZFXP17010 805 aaPredicted RBP30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 ECT2LQ008S8 904 aa30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 SULT2A1Q06520 285 aa30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 CCDC33Q8N5R6 958 aa30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 RPLP0P6Q8NHW5 317 aa30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 WDR24Q96S15 920 aa30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 CARD9Q9H257 536 aa30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 PRDM16Q9HAZ2 1276 aa30.29■■■□□ 2.44
LIMCH1-211ENST00000509638 ARHGAP42A6NI28 874 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 ATP1A1P05023 1023 aaKnown RBP30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 DCNP07585 359 aaKnown RBP30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 STK19P49842 368 aaPredicted RBP30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 PAPOLAP51003 745 aaKnown RBP30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 SERINC3Q13530 473 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 PTPRNQ16849 979 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 SEL1L2Q5TEA6 688 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 SYNPOQ8N3V7 929 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 CCDC26Q8TAB7 109 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 USP33Q8TEY7 942 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 ACDQ96AP0 544 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 PBXIP1Q96AQ6 731 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 HPCAL4Q9UM19 191 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 HEY1Q9Y5J3 304 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 AOC1P19801 751 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 ZNF234Q14588 700 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 ALLCQ8N6M5 410 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 CLDN23Q96B33 292 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 RPL10LQ96L21 214 aaKnown RBP30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 DTLQ9NZJ0 730 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 SLC25A13Q9UJS0 675 aa30.28■■■□□ 2.44
LIMCH1-211ENST00000509638 FAM86C2PA6NEL3 165 aa30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 ZMPSTE24O75844 475 aa30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 ARF5P84085 180 aa30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 FNDC3BQ53EP0 1204 aaKnown RBP30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 NPNTQ6UXI9 565 aa30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 LINGO4Q6UY18 593 aa30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 BBS12Q6ZW61 710 aa30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 ACOX2Q99424 681 aa30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 CACNA2D2Q9NY47 1150 aa30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 PLA2G4CQ9UP65 541 aa30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 ERVW-1Q9UQF0 538 aa30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 EFR3BQ9Y2G0 817 aa30.27■■■□□ 2.44
LIMCH1-211ENST00000509638 PI15O43692 258 aa30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 HNRNPLP14866 589 aaKnown RBP eCLIP30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 CXCR5P32302 372 aa30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 RPS9P46781 194 aaKnown RBP30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 MRPS21P82921 87 aaKnown RBP30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 PKN3Q6P5Z2 889 aa30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 ARHGAP36Q6ZRI8 547 aa30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 CHPFQ8IZ52 775 aa30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 ATPAF2Q8N5M1 289 aa30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 IL17RCQ8NAC3 791 aa30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 KCNV2Q8TDN2 545 aa30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 MRGPRX3Q96LB0 322 aa30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 THAP10Q9P2Z0 257 aaPredicted RBP30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 CKAP5Q14008 2032 aa30.26■■■□□ 2.43
LIMCH1-211ENST00000509638 KDELR3O43731 214 aa30.25■■■□□ 2.43
LIMCH1-211ENST00000509638 KLF8O95600 359 aaPredicted RBP30.25■■■□□ 2.43
LIMCH1-211ENST00000509638 TGM2P21980 687 aa30.25■■■□□ 2.43
LIMCH1-211ENST00000509638 GALNT2Q10471 571 aa30.25■■■□□ 2.43
LIMCH1-211ENST00000509638 SLC10A2Q12908 348 aaPredicted RBP30.25■■■□□ 2.43
LIMCH1-211ENST00000509638 HAUS1Q96CS2 278 aa30.25■■■□□ 2.43
LIMCH1-211ENST00000509638 CHRDQ9H2X0 955 aa30.25■■■□□ 2.43
LIMCH1-211ENST00000509638 SRPRAP08240 638 aaKnown RBP30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 PECAM1P16284 738 aaPredicted RBP30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 IL12RB1P42701 662 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 CLCN5P51795 746 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 GAS6Q14393 721 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 CCDC181Q5TID7 509 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 RETSATQ6NUM9 610 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 SERPINA13PQ6UXR4 307 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 LEKR1Q6ZMV7 388 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 TRMT11Q7Z4G4 463 aaKnown RBP30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 MYO19Q96H55 970 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 SP110Q9HB58 689 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 C11orf16Q9NQ32 467 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 SAE1Q9UBE0 346 aaPredicted RBP30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 HS3ST2Q9Y278 367 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 TJP3O95049 919 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 MT-CO1P00395 513 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 ST8SIA6P61647 398 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 E2F5Q15329 346 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 BMP8AQ7Z5Y6 402 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 TXNDC5Q8NBS9 432 aaKnown RBP30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 DLGAP2Q9P1A6 1054 aa30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 IPO11Q9UI26 975 aaKnown RBP30.24■■■□□ 2.43
LIMCH1-211ENST00000509638 J3KR12 359 aa30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 NPC1O15118 1278 aa30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 PRAMEF11O60813 436 aa30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 PRKCHP24723 683 aa30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 GARSP41250 739 aaKnown RBP30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 WASP42768 502 aa30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 SERPINH1P50454 418 aaKnown RBP30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 FBXL6Q8N531 539 aa30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 NAPGQ99747 312 aaPredicted RBP30.23■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms