RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 COL28A1Q2UY09 1125 aa23.87■■□□□ 1.41
COL27A1-208ENST00000494780 PTPN20Q4JDL3 420 aa23.87■■□□□ 1.41
COL27A1-208ENST00000494780 C14orf80Q86SX3 495 aa23.87■■□□□ 1.41
COL27A1-208ENST00000494780 TRIM69Q86WT6 500 aa23.87■■□□□ 1.41
COL27A1-208ENST00000494780 ZDHHC17Q8IUH5 632 aa23.87■■□□□ 1.41
COL27A1-208ENST00000494780 SH2D3CQ8N5H7 860 aa23.87■■□□□ 1.41
COL27A1-208ENST00000494780 SIX2Q9NPC8 291 aa23.87■■□□□ 1.41
COL27A1-208ENST00000494780 SCUBE2Q9NQ36 999 aa23.87■■□□□ 1.41
COL27A1-208ENST00000494780 DNAJC12Q9UKB3 198 aa23.87■■□□□ 1.41
COL27A1-208ENST00000494780 FOXN3O00409 490 aaPredicted RBP23.86■■□□□ 1.41
COL27A1-208ENST00000494780 MAGEC1O60732 1142 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 ZNF18P17022 549 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 CLCN1P35523 988 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 CNTN1Q12860 1018 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 BRMS1LQ5PSV4 323 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 AGBL4Q5VU57 503 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 Q6ZVU0 165 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 PDZD3Q86UT5 571 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 SLC47A2Q86VL8 602 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 EID2Q8N6I1 236 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 MLKLQ8NB16 471 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 PIP4K2CQ8TBX8 421 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 SIK2Q9H0K1 926 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 AJAP1Q9UKB5 411 aaPredicted RBP23.86■■□□□ 1.41
COL27A1-208ENST00000494780 ITPR1Q14643 2758 aa23.86■■□□□ 1.41
COL27A1-208ENST00000494780 RFPL3O75679 317 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 GGCXP38435 758 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 BPIFB4P59827 614 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 KRT83P78385 493 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 OTUD1Q5VV17 481 aaPredicted RBP23.85■■□□□ 1.41
COL27A1-208ENST00000494780 SPATS2Q86XZ4 545 aaKnown RBP23.85■■□□□ 1.41
COL27A1-208ENST00000494780 NPY6RQ99463 290 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 MUC3BQ9H195 1237 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 WDCPQ9H6R7 721 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 PREBQ9HCU5 417 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 PIGVQ9NUD9 493 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 TMEM51Q9NW97 253 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 ARHGEF38Q9NXL2 777 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 STAP1Q9ULZ2 295 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 HS3ST2Q9Y278 367 aa23.85■■□□□ 1.41
COL27A1-208ENST00000494780 CBX4O00257 560 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 MAT2AP31153 395 aaKnown RBP23.84■■□□□ 1.41
COL27A1-208ENST00000494780 HNF1BP35680 557 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 CXCR3P49682 368 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 UBE2HP62256 183 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 BNIP3Q12983 259 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 DNAJC3Q13217 504 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 STAT4Q14765 748 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 MAN2A1Q16706 1144 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 TPD52L1Q16890 204 aaPredicted RBP23.84■■□□□ 1.41
COL27A1-208ENST00000494780 SETMARQ53H47 684 aaPredicted RBP23.84■■□□□ 1.41
COL27A1-208ENST00000494780 SFMBT2Q5VUG0 894 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 FAM71AQ8IYT1 594 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 HNRNPLLQ8WVV9 542 aaKnown RBP23.84■■□□□ 1.41
COL27A1-208ENST00000494780 TSC1Q92574 1164 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 C2orf49Q9BVC5 232 aaPredicted RBP23.84■■□□□ 1.41
COL27A1-208ENST00000494780 TKTL2Q9H0I9 626 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.84■■□□□ 1.41
COL27A1-208ENST00000494780 FARP1Q9Y4F1 1045 aaPredicted RBP23.84■■□□□ 1.41
COL27A1-208ENST00000494780 PAXBP1Q9Y5B6 917 aa23.84■■□□□ 1.41
COL27A1-208ENST00000494780 PRAMEF26H0Y7S4 382 aa23.83■■□□□ 1.41
COL27A1-208ENST00000494780 ADCY5O95622 1261 aa23.83■■□□□ 1.41
COL27A1-208ENST00000494780 RHOCP08134 193 aa23.83■■□□□ 1.41
COL27A1-208ENST00000494780 SRCP12931 536 aa23.83■■□□□ 1.41
COL27A1-208ENST00000494780 ACADVLP49748 655 aa23.83■■□□□ 1.41
COL27A1-208ENST00000494780 POM121L1PQ3SYA9 428 aa23.83■■□□□ 1.41
COL27A1-208ENST00000494780 TMEM35BQ8NCS4 154 aa23.83■■□□□ 1.41
COL27A1-208ENST00000494780 NT5C3BQ969T7 300 aa23.83■■□□□ 1.41
COL27A1-208ENST00000494780 PGAP3Q96FM1 320 aaPredicted RBP23.83■■□□□ 1.41
COL27A1-208ENST00000494780 CCDC114Q96M63 670 aa23.83■■□□□ 1.41
COL27A1-208ENST00000494780 PLCB1Q9NQ66 1216 aa23.83■■□□□ 1.41
COL27A1-208ENST00000494780 BNIP3LO60238 219 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 RNGTTO60942 597 aaKnown RBP23.82■■□□□ 1.4
COL27A1-208ENST00000494780 CNTN5O94779 1100 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 F9P00740 461 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 PNMA6AP0CW24 399 aaPredicted RBP23.82■■□□□ 1.4
COL27A1-208ENST00000494780 JUPP14923 745 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 CDH5P33151 784 aaPredicted RBP23.82■■□□□ 1.4
COL27A1-208ENST00000494780 SCNN1AP37088 669 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 SULT1E1P49888 294 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 CCDC15Q0P6D6 951 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 ALFQ53S48 1182 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 ACBD5Q5T8D3 534 aaPredicted RBP23.82■■□□□ 1.4
COL27A1-208ENST00000494780 KANSL1Q7Z3B3 1105 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 SETD3Q86TU7 594 aaPredicted RBP23.82■■□□□ 1.4
COL27A1-208ENST00000494780 FAM114A1Q8IWE2 563 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 ZNF683Q8IZ20 524 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 ATP11CQ8NB49 1132 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 PSMB7Q99436 277 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 PDCL3Q9H2J4 239 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 ANLNQ9NQW6 1124 aa23.82■■□□□ 1.4
COL27A1-208ENST00000494780 LAMA5O15230 3695 aa23.81■■□□□ 1.4
COL27A1-208ENST00000494780 URB1O60287 2271 aaKnown RBP23.81■■□□□ 1.4
COL27A1-208ENST00000494780 DRGXA6NNA5 263 aa23.81■■□□□ 1.4
COL27A1-208ENST00000494780 MT-CO1P00395 513 aa23.81■■□□□ 1.4
COL27A1-208ENST00000494780 TFE3P19532 575 aaPredicted RBP23.81■■□□□ 1.4
COL27A1-208ENST00000494780 GABRB2P47870 512 aa23.81■■□□□ 1.4
COL27A1-208ENST00000494780 TAS2R38P59533 333 aa23.81■■□□□ 1.4
COL27A1-208ENST00000494780 RNASE9P60153 205 aaKnown RBP23.81■■□□□ 1.4
COL27A1-208ENST00000494780 DEUP1Q05D60 604 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms