RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SLC26A9Q7LBE3 791 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 PRPF39Q86UA1 669 aaKnown RBP16.54■□□□□ 0.24
COL7A1-204ENST00000462475 SLC47A2Q86VL8 602 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 TMPRSS12Q86WS5 348 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 SH2D3CQ8N5H7 860 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 MFSD2AQ8NA29 543 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 PIP4K2CQ8TBX8 421 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 NOX5Q96PH1 765 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 KDM4CQ9H3R0 1056 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 ERVMER34-1Q9H9K5 563 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 SCUBE2Q9NQ36 999 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 PIGVQ9NUD9 493 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 KIAA1468Q9P260 1216 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 CA5BQ9Y2D0 317 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 C1QTNF3-AMACRE9PGA6 284 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 M0QYT0 321 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 MCF2LO15068 1137 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 ALOX15BO15296 676 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 CLDN11O75508 207 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 CNTN5O94779 1100 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 SRCP12931 536 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 NOS2P35228 1153 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 RXRGP48443 463 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 SLC6A3Q01959 620 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 PTK2Q05397 1052 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 ACAP1Q15027 740 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 CAMK4Q16566 473 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 C5orf22Q49AR2 442 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 SOWAHCQ53LP3 525 aaPredicted RBP16.53■□□□□ 0.24
COL7A1-204ENST00000462475 KANSL1Q7Z3B3 1105 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 TRIM69Q86WT6 500 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 TSC1Q92574 1164 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 LRIG1Q96JA1 1093 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 PSMB7Q99436 277 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 SIK2Q9H0K1 926 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 SYNCQ9H7C4 482 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 DNAJC12Q9UKB3 198 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 DMTF1Q9Y222 760 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 TBC1D30Q9Y2I9 924 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 SNX10Q9Y5X0 201 aa16.53■□□□□ 0.24
COL7A1-204ENST00000462475 FAM170AA1A519 330 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 FOXN3O00409 490 aaPredicted RBP16.52■□□□□ 0.24
COL7A1-204ENST00000462475 SNAP91O60641 907 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 SDC3O75056 442 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 ADCY5O95622 1261 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 MT-CO1P00395 513 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 CTSLP07711 333 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 ZNF18P17022 549 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 CLCN1P35523 988 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 KRT9P35527 623 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 CDH4P55283 916 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 TAS2R38P59533 333 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 ALFQ53S48 1182 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 ZNF683Q8IZ20 524 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 OXR1Q8N573 874 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 ZNF397Q8NF99 534 aaPredicted RBP16.52■□□□□ 0.24
COL7A1-204ENST00000462475 CRELD1Q96HD1 420 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 PPP1R9BQ96SB3 815 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 NPY6RQ99463 290 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 MUC3BQ9H195 1237 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 HS3ST2Q9Y278 367 aa16.52■□□□□ 0.24
COL7A1-204ENST00000462475 URB1O60287 2271 aaKnown RBP16.51■□□□□ 0.23
COL7A1-204ENST00000462475 A0A087WV48 116 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 E9PAM4 449 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 K7ERQ8 282 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 JUPP14923 745 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 HNF1BP35680 557 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 NUDT1P36639 197 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 MTIF2P46199 727 aaKnown RBP16.51■□□□□ 0.23
COL7A1-204ENST00000462475 SULT1E1P49888 294 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 MTA1Q13330 715 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 SETMARQ53H47 684 aaPredicted RBP16.51■□□□□ 0.23
COL7A1-204ENST00000462475 PIP5KL1Q5T9C9 394 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 HES3Q5TGS1 186 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 FBXL19Q6PCT2 694 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 IQCHQ86VS3 1027 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 NXPE2Q96DL1 559 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 MYOCQ99972 504 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 TKTL2Q9H0I9 626 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 PREBQ9HCU5 417 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 TMPRSS4Q9NRS4 437 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 ARHGEF38Q9NXL2 777 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 VPS51Q9UID3 782 aa16.51■□□□□ 0.23
COL7A1-204ENST00000462475 PRAMEF26H0Y7S4 382 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 RNF103O00237 685 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 RHOCP08134 193 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 C1SP09871 688 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 PRLRP16471 622 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 RRM1P23921 792 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 CXCR3P49682 368 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 RNASE9P60153 205 aaKnown RBP16.5■□□□□ 0.23
COL7A1-204ENST00000462475 OVGP1Q12889 678 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 TARDBPQ13148 414 aaKnown RBP eCLIP16.5■□□□□ 0.23
COL7A1-204ENST00000462475 STAT4Q14765 748 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 BRMS1LQ5PSV4 323 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 TFAP2DQ7Z6R9 452 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 FAM71AQ8IYT1 594 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 ATP11CQ8NB49 1132 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 TMEM145Q8NBT3 493 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 OR2A12Q8NGT7 310 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms