RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 C6orf118Q5T5N4 469 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 TBC1D3GQ6DHY5 549 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 TBC1D3CQ6IPX1 549 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 NAPEPLDQ6IQ20 393 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 CXorf57Q6NSI4 855 aaKnown RBP13.29□□□□□ -0.28
LINC00339-202ENST00000416769 SARM1Q6SZW1 724 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 SND1Q7KZF4 910 aaKnown RBP eCLIP13.29□□□□□ -0.28
LINC00339-202ENST00000416769 TBC1D3Q8IZP1 549 aaPredicted RBP13.29□□□□□ -0.28
LINC00339-202ENST00000416769 EHBP1Q8NDI1 1231 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 AZIN2Q96A70 460 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 NAF1Q96HR8 494 aaKnown RBP13.29□□□□□ -0.28
LINC00339-202ENST00000416769 SERPINB11Q96P15 392 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 NT5C1BQ96P26 610 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 FZD3Q9NPG1 666 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 SCML1Q9UN30 329 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 ATMQ13315 3056 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 SYNJ2BP-COX16A0A087WUM0 186 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 FAM170AA1A519 330 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 TARSL2A2RTX5 802 aaKnown RBP13.28□□□□□ -0.28
LINC00339-202ENST00000416769 LGALS16A8MUM7 142 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 E5RJQ4 531 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 PYCARD-AS1I3L0S3 204 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 PES1O00541 588 aaKnown RBP13.28□□□□□ -0.28
LINC00339-202ENST00000416769 CASC3O15234 703 aaKnown RBP13.28□□□□□ -0.28
LINC00339-202ENST00000416769 ATXN7O15265 892 aaPredicted RBP13.28□□□□□ -0.28
LINC00339-202ENST00000416769 CBFA2T2O43439 604 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 SIGLEC6O43699 453 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 DFNA5O60443 496 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 SRPRAP08240 638 aaKnown RBP13.28□□□□□ -0.28
LINC00339-202ENST00000416769 KRT10P13645 584 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 C5AR1P21730 350 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 TBXAS1P24557 533 aaPredicted RBP13.28□□□□□ -0.28
LINC00339-202ENST00000416769 HNF1BP35680 557 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 GPD2P43304 727 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 TAS2R38P59533 333 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 YWHAEP62258 255 aaKnown RBP13.28□□□□□ -0.28
LINC00339-202ENST00000416769 GSE1Q14687 1217 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 RTP5Q14D33 572 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 FKBP15Q5T1M5 1219 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 AGBL4Q5VU57 503 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 KDM7AQ6ZMT4 941 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 GBP6Q6ZN66 633 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 Q6ZVU0 165 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 ERICH1Q86X53 443 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 CCAR2Q8N163 923 aaKnown RBP13.28□□□□□ -0.28
LINC00339-202ENST00000416769 SLC25A45Q8N413 288 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 FAM131CQ96AQ9 280 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 ALG14Q96F25 216 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 HSFY1Q96LI6 401 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 NOX5Q96PH1 765 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 PRMT1Q99873 361 aaKnown RBP13.28□□□□□ -0.28
LINC00339-202ENST00000416769 COX16Q9P0S2 106 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 IFNKQ9P0W0 207 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 KIF26BQ2KJY2 2108 aa13.28□□□□□ -0.28
LINC00339-202ENST00000416769 FFAR2O15552 330 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 TEX33O43247 280 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 BNIP3LO60238 219 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 TRUB2O95900 331 aaKnown RBP13.27□□□□□ -0.29
LINC00339-202ENST00000416769 ADH1BP00325 375 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 IGLV3-25P01717 112 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 TPM3P06753 285 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 CTSLP07711 333 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 GIMD1P0DJR0 217 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 PLA2G2AP14555 144 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 GLDCP23378 1020 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 RXRGP48443 463 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 RPL34P49207 117 aaKnown RBP13.27□□□□□ -0.29
LINC00339-202ENST00000416769 ARRB1P49407 418 aaPredicted RBP13.27□□□□□ -0.29
LINC00339-202ENST00000416769 APBA1Q02410 837 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 UBXN1Q04323 297 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 TLE3Q04726 772 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 KCNMA1Q12791 1236 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 ELAVL3Q14576 367 aaKnown RBP13.27□□□□□ -0.29
LINC00339-202ENST00000416769 EXOC3L4Q17RC7 722 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 RNF219Q5W0B1 726 aaPredicted RBP13.27□□□□□ -0.29
LINC00339-202ENST00000416769 GJB7Q6PEY0 223 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 SPACA3Q8IXA5 215 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 ZNF843Q8N446 348 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 KDM1BQ8NB78 822 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 ERGIC2Q96RQ1 377 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 KIAA1257Q9ULG3 409 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 SNX10Q9Y5X0 201 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 COL27A1Q8IZC6 1860 aaPredicted RBP13.27□□□□□ -0.29
LINC00339-202ENST00000416769 COL6A6A6NMZ7 2263 aa13.27□□□□□ -0.29
LINC00339-202ENST00000416769 TYW5A2RUC4 315 aaKnown RBP13.26□□□□□ -0.29
LINC00339-202ENST00000416769 E9PAM4 449 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 PLRG1O43660 514 aaKnown RBP13.26□□□□□ -0.29
LINC00339-202ENST00000416769 GRAP2O75791 330 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 FBXO21O94952 628 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 MT-CO1P00395 513 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 APOEP02649 317 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 CKMT2P17540 419 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 CLDN2P57739 230 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 C19orf57Q0VDD7 668 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 EIF4EBP2Q13542 120 aaPredicted RBP13.26□□□□□ -0.29
LINC00339-202ENST00000416769 ZNF542PQ5EBM4 170 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 FBXL22Q6P050 247 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 C14orf80Q86SX3 495 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 MFSD2AQ8NA29 543 aa13.26□□□□□ -0.29
LINC00339-202ENST00000416769 SNIP1Q8TAD8 396 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms