RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 TMEM131Q92545 1883 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 ILVBLA1L0T0 632 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 METTL12A8MUP2 240 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 LRIG2O94898 1065 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 SERPING1P05155 500 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 TPM3P06753 285 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 CASP14P31944 242 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 SLC8A1P32418 973 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 PSMD8P48556 350 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 SCAPQ12770 1279 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 WDR45BQ5MNZ6 344 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 DCAF12L1Q5VU92 463 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 SLC23A3Q6PIS1 610 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 LINGO4Q6UY18 593 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 TMC6Q7Z403 805 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 DCAF4L2Q8NA75 395 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 ATP11CQ8NB49 1132 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 CEP76Q8TAP6 659 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 ZNF653Q96CK0 615 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 TBC1D31Q96DN5 1066 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 IQCDQ96DY2 449 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 SPON2Q9BUD6 331 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.18■□□□□ 0.02
LIMS4-201ENST00000413601 BTBD1Q9H0C5 482 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 C6orf106Q9H6K1 298 aaPredicted RBP15.18■□□□□ 0.02
LIMS4-201ENST00000413601 FSCN3Q9NQT6 498 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 NDFIP2Q9NV92 336 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 FBXL12Q9NXK8 326 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 MYO1AQ9UBC5 1043 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 CNOT8Q9UFF9 292 aaKnown RBP15.18■□□□□ 0.02
LIMS4-201ENST00000413601 SERGEFQ9UGK8 458 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 ADAMTS1Q9UHI8 967 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 DNAI1Q9UI46 699 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 SCML1Q9UN30 329 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 NEU3Q9UQ49 428 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 HS3ST2Q9Y278 367 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 NCKAP1Q9Y2A7 1128 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 BZW2Q9Y6E2 419 aaKnown RBP15.18■□□□□ 0.02
LIMS4-201ENST00000413601 LAMA1P25391 3075 aa15.18■□□□□ 0.02
LIMS4-201ENST00000413601 A0A1W2PP55 124 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 TMEM191CA6NGB0 347 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 C4orf47A7E2U8 309 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 K7ERQ8 282 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 CBX4O00257 560 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 SMAD6O43541 496 aaKnown RBP15.17■□□□□ 0.02
LIMS4-201ENST00000413601 BNIP3LO60238 219 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 SEMA4FO95754 770 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 IL1BP01584 269 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 SERPINF2P08697 491 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 SRCP12931 536 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 RHOQP17081 205 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 DESP17661 470 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 ENGP17813 658 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 PSMA2P25787 234 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 GNA12Q03113 381 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 ELAVL3Q14576 367 aaKnown RBP15.17■□□□□ 0.02
LIMS4-201ENST00000413601 EFHC2Q5JST6 749 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 IL31Q6EBC2 164 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 ZNF783Q6ZMS7 281 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 Q6ZVU0 165 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 USP30Q70CQ3 517 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 ERMP1Q7Z2K6 904 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 NLRP14Q86W24 1093 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 AADATQ8N5Z0 425 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 DNASE2BQ8WZ79 361 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 OMDQ99983 421 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 TRIM7Q9C029 511 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 ISCUQ9H1K1 167 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 MIR1-1HGQ9H1L0 117 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 NEUROG2Q9H2A3 272 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 SGK2Q9HBY8 427 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 ATP13A1Q9HD20 1204 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 FZD10Q9ULW2 581 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 SLC6A14Q9UN76 642 aa15.17■□□□□ 0.02
LIMS4-201ENST00000413601 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.17■□□□□ 0.02
LIMS4-201ENST00000413601 CDX4O14627 284 aaPredicted RBP15.16■□□□□ 0.02
LIMS4-201ENST00000413601 CBFA2T2O43439 604 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 CREB3O43889 395 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 RNASEH2AO75792 299 aaKnown RBP15.16■□□□□ 0.02
LIMS4-201ENST00000413601 ADH1BP00325 375 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 L1CAMP32004 1257 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 ZNF252P-AS1Q0IIN9 211 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 SFSWAPQ12872 951 aaKnown RBP15.16■□□□□ 0.02
LIMS4-201ENST00000413601 RABEPKQ7Z6M1 372 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 VPS36Q86VN1 386 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 HDDC3Q8N4P3 179 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 ARFGAP1Q8N6T3 406 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 OR8D1Q8WZ84 308 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 SNX19Q92543 992 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 TRIM11Q96F44 468 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 PCED1AQ9H1Q7 454 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 CAPN10Q9HC96 672 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 TMEM9BQ9NQ34 198 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 TMEM248Q9NWD8 314 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 GPATCH2LQ9NWQ4 482 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 EIF2B4Q9UI10 523 aaKnown RBP15.16■□□□□ 0.02
LIMS4-201ENST00000413601 SARDHQ9UL12 918 aa15.16■□□□□ 0.02
LIMS4-201ENST00000413601 ASCC3Q8N3C0 2202 aaKnown RBP15.15■□□□□ 0.02
LIMS4-201ENST00000413601 A0A087X0T9 212 aa15.15■□□□□ 0.02
LIMS4-201ENST00000413601 FAM47DPA6NHR8 397 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms