RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 FAM234BA2RU67 622 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 H3BQV1 296 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 RPL17P18621 184 aaKnown RBP6.91□□□□□ -1.3
USP40-202ENST00000409945 HOXC8P31273 242 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 TXKP42681 527 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 CARSP49589 748 aaKnown RBP6.91□□□□□ -1.3
USP40-202ENST00000409945 ORC2Q13416 577 aaPredicted RBP6.91□□□□□ -1.3
USP40-202ENST00000409945 PLCB4Q15147 1175 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 INO80DQ53TQ3 878 aaPredicted RBP6.91□□□□□ -1.3
USP40-202ENST00000409945 DCAF17Q5H9S7 520 aaPredicted RBP6.91□□□□□ -1.3
USP40-202ENST00000409945 B3GNTL1Q67FW5 361 aaPredicted RBP6.91□□□□□ -1.3
USP40-202ENST00000409945 NAIF1Q69YI7 327 aaPredicted RBP6.91□□□□□ -1.3
USP40-202ENST00000409945 OTUD6AQ7L8S5 288 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 TMPRSS9Q7Z410 1059 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 RPAINQ86UA6 219 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 DIS3L2Q8IYB7 885 aaKnown RBP6.91□□□□□ -1.3
USP40-202ENST00000409945 FTHL17Q9BXU8 183 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 FAM49AQ9H0Q0 323 aaPredicted RBP6.91□□□□□ -1.3
USP40-202ENST00000409945 SORCS3Q9UPU3 1222 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 SQORQ9Y6N5 450 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 IGKV6D-21A0A0A0MT36 114 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 A0A1B0GTW7 788 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 CTDNEP1O95476 244 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 TDP2O95551 362 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 CXCL10P02778 98 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 ERBB2P04626 1255 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 HOXA5P20719 270 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 ITGA8P53708 1063 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 LILRA4P59901 499 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 MRPS6P82932 125 aaKnown RBP6.9□□□□□ -1.3
USP40-202ENST00000409945 RAB32Q13637 225 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 KCNAB1Q14722 419 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 CALCRLQ16602 461 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 TMEM266Q2M3C6 531 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 PLA1AQ53H76 456 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 FCRL6Q6DN72 434 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 CCDC60Q8IWA6 550 aaPredicted RBP6.9□□□□□ -1.3
USP40-202ENST00000409945 METTL13Q8N6R0 699 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 ACRBPQ8NEB7 543 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 DNAJB3Q8WWF6 145 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 NACC2Q96BF6 587 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 IQCDQ96DY2 449 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 SCLT1Q96NL6 688 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 BDH2Q9BUT1 245 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 COLEC11Q9BWP8 271 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 TTLL2Q9BWV7 592 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 IFIH1Q9BYX4 1025 aaKnown RBP6.9□□□□□ -1.3
USP40-202ENST00000409945 RAB34Q9BZG1 259 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 FOXP1Q9H334 677 aaPredicted RBP6.9□□□□□ -1.3
USP40-202ENST00000409945 PCDHA12Q9UN75 941 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 SMC3Q9UQE7 1217 aa6.9□□□□□ -1.3
USP40-202ENST00000409945 TRIP12Q14669 1992 aaPredicted RBP6.9□□□□□ -1.3
USP40-202ENST00000409945 MYH9P35579 1960 aaKnown RBP6.9□□□□□ -1.31
USP40-202ENST00000409945 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 MBLAC1A4D2B0 266 aaPredicted RBP6.89□□□□□ -1.31
USP40-202ENST00000409945 RAB27BO00194 218 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 NEMFO60524 1076 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 JAK2O60674 1132 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 RASSF9O75901 435 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 LARGE1O95461 756 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 CCNE2O96020 404 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 ITGB3P05106 788 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 ANXA2P07355 339 aaKnown RBP6.89□□□□□ -1.31
USP40-202ENST00000409945 EEF1GP26641 437 aaKnown RBP6.89□□□□□ -1.31
USP40-202ENST00000409945 KLRC1P26715 233 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 PSMC5P62195 406 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 XKR3Q5GH77 459 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 MTHFD1LQ6UB35 978 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 TRMT1LQ7Z2T5 733 aaKnown RBP6.89□□□□□ -1.31
USP40-202ENST00000409945 KRTAP19-1Q8IUB9 90 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 GSPT2Q8IYD1 628 aaKnown RBP6.89□□□□□ -1.31
USP40-202ENST00000409945 GLIS1Q8NBF1 620 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 ERMNQ8TAM6 284 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 NEK9Q8TD19 979 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 ADOQ96SZ5 270 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 NELL2Q99435 816 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 MESP1Q9BRJ9 268 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 ARFGAP3Q9NP61 516 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 TRPV2Q9Y5S1 764 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 BTBD18B2RXH4 712 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 FAM20BO75063 409 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 PSMD10O75832 226 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 FDPSP14324 419 aaKnown RBP6.89□□□□□ -1.31
USP40-202ENST00000409945 CHKAP35790 457 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 QARSP47897 775 aaKnown RBP6.89□□□□□ -1.31
USP40-202ENST00000409945 WDR5P61964 334 aaKnown RBP6.89□□□□□ -1.31
USP40-202ENST00000409945 ADAM17P78536 824 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 PRKCEQ02156 737 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 PPP2R5CQ13362 524 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 TRIM71Q2Q1W2 868 aaKnown RBP6.89□□□□□ -1.31
USP40-202ENST00000409945 CD300EQ496F6 205 aaPredicted RBP6.89□□□□□ -1.31
USP40-202ENST00000409945 ARHGAP15Q53QZ3 475 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 USP49Q70CQ1 688 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 HERC6Q8IVU3 1022 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 MYOCDQ8IZQ8 938 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 TXLNBQ8N3L3 684 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 DBF4BQ8NFT6 615 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 LENG9Q96B70 501 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 MBOAT7Q96N66 472 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 PCYT2Q99447 389 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms