RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 RASGRP3Q8IV61 690 aa4.9□□□□□ -1.63
CLK1-203ENST00000409769 FTSJ3Q8IY81 847 aaKnown RBP4.9□□□□□ -1.63
CLK1-203ENST00000409769 PI4KAP1Q8N8J0 262 aa4.9□□□□□ -1.63
CLK1-203ENST00000409769 DNAAF4Q8WXU2 420 aa4.9□□□□□ -1.63
CLK1-203ENST00000409769 GRAMD1AQ96CP6 724 aa4.9□□□□□ -1.63
CLK1-203ENST00000409769 VCPIP1Q96JH7 1222 aa4.9□□□□□ -1.63
CLK1-203ENST00000409769 KCNK9Q9NPC2 374 aa4.9□□□□□ -1.63
CLK1-203ENST00000409769 CASZ1Q86V15 1759 aa4.9□□□□□ -1.63
CLK1-203ENST00000409769 CNTNAP2Q9UHC6 1331 aa4.9□□□□□ -1.63
CLK1-203ENST00000409769 LAMB2P55268 1798 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 CLIC1O00299 241 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 PCDH17O14917 1159 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 FFAR2O15552 330 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 CTIFO43310 598 aaKnown RBP4.89□□□□□ -1.63
CLK1-203ENST00000409769 CA12O43570 354 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 AIMP1Q12904 312 aaKnown RBP4.89□□□□□ -1.63
CLK1-203ENST00000409769 SEMA3BQ13214 749 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 PTK2BQ14289 1009 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 KRT72Q14CN4 511 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 MFSD13AQ14CX5 517 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 BRD3Q15059 726 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 RBMS2Q15434 407 aaKnown RBP4.89□□□□□ -1.63
CLK1-203ENST00000409769 MIDNQ504T8 468 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 RUSC1-AS1Q66K80 236 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 CCDC144NLQ6NUI1 221 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 ACSM6Q6P461 480 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 ITPRIPQ8IWB1 547 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 SPICE1Q8N0Z3 855 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 OR52L2PQ8NGH6 319 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 GLMPQ8WWB7 406 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 EID2BQ96D98 161 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 C18orf8Q96DM3 657 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 ZBTB40Q9NUA8 1239 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 WWOXQ9NZC7 414 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 IGSF9Q9P2J2 1179 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 NFU1Q9UMS0 254 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 UTYO14607 1347 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 MAP3K15Q6ZN16 1313 aa4.89□□□□□ -1.63
CLK1-203ENST00000409769 A0A087WV62 115 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 LY6G6EA0A0G2JKS1 128 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 ERVV-1B6SEH8 477 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 CAMTA2O94983 1202 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 DDX58O95786 925 aaKnown RBP4.88□□□□□ -1.63
CLK1-203ENST00000409769 IGKV5-2P06315 115 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 ANXA6P08133 673 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 ITGA5P08648 1049 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 SRGAP2BP0DMP2 458 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 GALNSP34059 522 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 GSTM5P46439 218 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 JAK3P52333 1124 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 TNFAIP2Q03169 654 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 SRSF1Q07955 248 aaKnown RBP eCLIP4.88□□□□□ -1.63
CLK1-203ENST00000409769 CSHL1Q14406 222 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 STARD3Q14849 445 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 ANO7Q6IWH7 933 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 PGBD2Q6P3X8 592 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 RANBP10Q6VN20 620 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 DEF8Q6ZN54 512 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 IRF2BP2Q7Z5L9 587 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 UBE2Q1Q7Z7E8 422 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 TTC30AQ86WT1 665 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 SKAP1Q86WV1 359 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 P3H2Q8IVL5 708 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 NRACQ8N912 160 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 LINS1Q8NG48 757 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 SPATA3Q8NHX4 192 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 MUL1Q969V5 352 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 PRR11Q96HE9 360 aaPredicted RBP4.88□□□□□ -1.63
CLK1-203ENST00000409769 HS6ST2Q96MM7 605 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 MEIS3Q99687 375 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 ISCA1Q9BUE6 129 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 EFHD1Q9BUP0 239 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 USP44Q9H0E7 712 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 TP63Q9H3D4 680 aaPredicted RBP4.88□□□□□ -1.63
CLK1-203ENST00000409769 USP29Q9HBJ7 922 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 FSCN3Q9NQT6 498 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 ABHD10Q9NUJ1 306 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 LRCH1Q9Y2L9 728 aa4.88□□□□□ -1.63
CLK1-203ENST00000409769 DDX60Q8IY21 1712 aaKnown RBP4.88□□□□□ -1.63
CLK1-203ENST00000409769 NRXN2Q9P2S2 1712 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 IGKV2D-30A0A075B6S6 120 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 J3KTA2 159 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 NPC1O15118 1278 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 TAF5LO75529 589 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 DRD1P21728 446 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 HMGB2P26583 209 aaKnown RBP4.87□□□□□ -1.63
CLK1-203ENST00000409769 IGHMBP2P38935 993 aaKnown RBP4.87□□□□□ -1.63
CLK1-203ENST00000409769 CDK7P50613 346 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 RHBDL3P58872 404 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 RAE1P78406 368 aaKnown RBP4.87□□□□□ -1.63
CLK1-203ENST00000409769 SPARCL1Q14515 664 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 HLFQ16534 295 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 TRIM60Q495X7 471 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 HSP90AB3PQ58FF7 597 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 MSANTD2Q6P1R3 559 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 CLEC4GQ6UXB4 293 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 KIF6Q6ZMV9 814 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 ZNF34Q8IZ26 560 aa4.87□□□□□ -1.63
CLK1-203ENST00000409769 OSR1Q8TAX0 266 aaPredicted RBP4.87□□□□□ -1.63
CLK1-203ENST00000409769 FAM71BQ8TC56 605 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms