RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 R3HDM2Q9Y2K5 976 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 DERAQ9Y315 318 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SNX9Q9Y5X1 595 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 GPR75-ASB3A0A0A6YYF3 556 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 PAPSS1O43252 624 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 DENRO43583 198 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 IPO13O94829 963 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 TDP2O95551 362 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 HIST1H2AGP0C0S8 130 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 FAM228BP0C875 321 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ANPEPP15144 967 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 PORP16435 677 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 HIST1H2ADP20671 130 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 RRM2P31350 389 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 FEN1P39748 380 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ALDH1A3P47895 512 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 NPTX2P47972 431 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CDK9P50750 372 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SEC24CP53992 1094 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CNTN1Q12860 1018 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 VN1R5Q7Z5H4 357 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CCDC54Q8NEL0 328 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 NSMCE2Q96MF7 247 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CHP1Q99653 195 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 LACRTQ9GZZ8 138 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SLITRK2Q9H156 845 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 LHX5Q9H2C1 402 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 HIPK3Q9H422 1215 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ACAD9Q9H845 621 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 HOXC10Q9NYD6 342 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 NARFQ9UHQ1 456 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 MAD2L2Q9UI95 211 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 MTF2Q9Y483 593 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SLIT2O94813 1529 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ARPC4-TTLL3A0A0A6YYG9 625 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 KRT33AO76009 404 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CRHR1P34998 444 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 HNRNPFP52597 415 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 TOMM20Q15388 145 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SMU1Q2TAY7 513 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 TTMPQ5BVD1 217 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ADGRD1Q6QNK2 874 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SYTL1Q8IYJ3 562 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 TCAIMQ8N3R3 496 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ZBTB8BQ8NAP8 495 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 DPF2Q92785 391 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CENPNQ96H22 339 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SEZ6LQ9BYH1 1024 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CDH19Q9H159 772 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SMYD3Q9H7B4 428 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 RBM7Q9Y580 266 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 FAM172BPA6NC97 362 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CCNT2O60583 730 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SCN2BO60939 215 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 FAM155BO75949 473 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 MYBP10242 640 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 NCF1P14598 390 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 KCNA2P16389 499 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 AOC1P19801 751 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 GPD1P21695 349 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ECT2LQ008S8 904 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF45Q02386 682 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 GALNT3Q14435 633 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SMCO1Q147U7 214 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF618Q5T7W0 954 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 DPP8Q6V1X1 898 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 DDIASQ8IXT1 998 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 LRRC57Q8N9N7 239 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CHST13Q8NET6 341 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 TRPV3Q8NET8 790 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 MTMR4Q9NYA4 1195 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 GMIPQ9P107 970 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ARID1AO14497 2285 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 EML1O00423 815 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SKAP2O75563 359 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ARHGEF15O94989 841 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ITIH1P19827 911 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ATP5F1P24539 256 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 RCVRNP35243 200 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ACLYP53396 1101 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 PRAMEP78395 509 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SCN1BQ07699 218 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CUL2Q13617 745 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 DLGAP5Q15398 846 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 FAM187BQ17R55 369 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SUPT20HL1Q3ZLR7 823 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 RABL3Q5HYI8 236 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SULT1C3Q6IMI6 304 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF227Q86WZ6 799 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 NKAPQ8N5F7 415 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 POF1BQ8WVV4 589 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CREB3L1Q96BA8 519 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF333Q96JL9 665 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 RBM4BQ9BQ04 359 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CNPPD1Q9BV87 410 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 RBM4Q9BWF3 364 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 PRDM5Q9NQX1 630 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 TLL2Q9Y6L7 1015 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 AIREO43918 545 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms