RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	SPAG4	Q9NPE6	437 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	SEMA4B	Q9NPR2	832 aa	Predicted RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ATAD3A	Q9NVI7	634 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	NCKIPSD	Q9NZQ3	722 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	NDUFAF1	Q9Y375	327 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005		A0A087WXM4	84 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005		A0A087WZ62	844 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	FAM149A	A5PLN7	773 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	PTGES3L	E9PB15	166 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLCO1B7	G3V0H7	640 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	GJB1	P08034	283 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	HSD17B4	P51659	736 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	POU4F1	Q01851	419 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	BST2	Q10589	180 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	GJC2	Q5T442	439 aa	Predicted RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	EGFLAM	Q63HQ2	1017 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ABRAXAS1	Q6UWZ7	409 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC9A9	Q8IVB4	645 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	FLAD1	Q8NFF5	587 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC47A1	Q96FL8	570 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	OTUD5	Q96G74	571 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	COX4I2	Q96KJ9	171 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	TBCB	Q99426	244 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	LGMN	Q99538	433 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	HSD17B14	Q9BPX1	270 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	MRPL45	Q9BRJ2	306 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	RERGL	Q9H628	205 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ALG9	Q9H6U8	611 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	COMMD8	Q9NX08	183 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	EGFL7	Q9UHF1	273 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	DSE	Q9UL01	958 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	LRRC42	Q9Y546	428 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	NR2E3	Q9Y5X4	410 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	TMEM191C	A6NGB0	347 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	DCAF8L1	A6NGE4	600 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	MAGEB3	O15480	346 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	TRMU	O75648	421 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	CPSF4	O95639	269 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	CYP4B1	P13584	511 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	EIF4B	P23588	611 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	NR2C2	P49116	596 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	HADHB	P55084	474 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	MPP2	Q14168	576 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	DGUOK	Q16854	277 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	MICALL2	Q8IY33	904 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	UBR7	Q8N806	425 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	TTLL6	Q8N841	843 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	NDRG1	Q92597	394 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	EDEM1	Q92611	657 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	LPAR1	Q92633	364 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	SKA1	Q96BD8	255 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	TNIP3	Q96KP6	325 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	MTG1	Q9BT17	334 aa	Predicted RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	BBS2	Q9BXC9	721 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	CATSPERB	Q9H7T0	1116 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	COQ10B	Q9H8M1	238 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	RMI1	Q9H9A7	625 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	LIN28A	Q9H9Z2	209 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	APOBEC3G	Q9HC16	384 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	UTP6	Q9NYH9	597 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZMYM5	Q9UJ78	669 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	BARX2	Q9UMQ3	279 aa	Predicted RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	MTF2	Q9Y483	593 aa	Predicted RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	CCDC189	A1A4V9	331 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	HACD1	B0YJ81	288 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	NDUFS3	O75489	264 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CSH1	P0DML2	217 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CSH2	P0DML3	217 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ATXN8OS	P0DMR3	200 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	FCGR1A	P12314	374 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ADRA2B	P18089	450 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CDH3	P22223	829 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	AKAP5	P24588	427 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ACAT1	P24752	427 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SOX6	P35712	828 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	GJA8	P48165	433 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	NAA20	P61599	178 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	VAC14	Q08AM6	782 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ITGA7	Q13683	1181 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	PLCL1	Q15111	1095 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ATP6AP1L	Q52LC2	224 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	PITRM1	Q5JRX3	1037 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ERO1B	Q86YB8	467 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	IGDCC3	Q8IVU1	814 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	OTULIN	Q96BN8	352 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	RNF157	Q96PX1	679 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CIB1	Q99828	191 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	EBNA1BP2	Q99848	306 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	LPIN3	Q9BQK8	851 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ATXN3L	Q9H3M9	355 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SMARCAD1	Q9H4L7	1026 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	RUBCNL	Q9H714	662 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	POLR1B	Q9H9Y6	1135 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	PREB	Q9HCU5	417 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	HACL1	Q9UJ83	578 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ADAMTS6	Q9UKP5	1117 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	TMCO1	Q9UM00	188 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ACOT9	Q9Y305	439 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	PSMD12	O00232	456 aa	Predicted RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SPTLC1	O15269	473 aa		5.06	□□□□□ -1.6

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