RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 PCDHA11Q9Y5I1 949 aa16.58■□□□□ 0.25
CUX1-213ENST00000549414 PMM2O15305 246 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 CLCNKBP51801 687 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 INPP5AQ14642 412 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 KYAT3Q6YP21 454 aaKnown RBP16.58■□□□□ 0.24
CUX1-213ENST00000549414 MRPS31Q92665 395 aaKnown RBP16.58■□□□□ 0.24
CUX1-213ENST00000549414 DEFB118Q96PH6 123 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 RNF39Q9H2S5 420 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 WWOXQ9NZC7 414 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 FAM50BQ9Y247 325 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 MYBPHLA2RUH7 354 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 NR5A2O00482 541 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 TMEM63AO94886 807 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 MPOP05164 745 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 C1orf220Q5T0J3 134 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 TTC23LQ6PF05 361 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 CRELD2Q6UXH1 353 aaPredicted RBP16.58■□□□□ 0.24
CUX1-213ENST00000549414 SNX32Q86XE0 403 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 PCDH19Q8TAB3 1148 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 NAF1Q96HR8 494 aaKnown RBP16.58■□□□□ 0.24
CUX1-213ENST00000549414 KLHL5Q96PQ7 755 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 VAT1Q99536 393 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 IL22Q9GZX6 179 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 SOX13Q9UN79 622 aa16.58■□□□□ 0.24
CUX1-213ENST00000549414 SRRM3A6NNA2 597 aaPredicted RBP16.57■□□□□ 0.24
CUX1-213ENST00000549414 TOMM70O94826 608 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 RBP1P09455 135 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 TSPAN8P19075 237 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 ABCE1P61221 599 aaKnown RBP16.57■□□□□ 0.24
CUX1-213ENST00000549414 CYP1B1Q16678 543 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 CCDC153Q494R4 210 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 SNX30Q5VWJ9 437 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 ALYREFQ86V81 257 aaKnown RBP16.57■□□□□ 0.24
CUX1-213ENST00000549414 SNX31Q8N9S9 440 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 ABTB1Q969K4 478 aaPredicted RBP16.57■□□□□ 0.24
CUX1-213ENST00000549414 FCRL2Q96LA5 508 aaPredicted RBP16.57■□□□□ 0.24
CUX1-213ENST00000549414 GPR88Q9GZN0 384 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 MDM4O15151 490 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 SYTL3Q4VX76 610 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 ISLR2Q6UXK2 745 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 IZUMO2Q6UXV1 221 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 BRD8Q9H0E9 1235 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 RUBCNLQ9H714 662 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 CNGB3Q9NQW8 809 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 EFR3BQ9Y2G0 817 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 MYH1P12882 1939 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 HEATR9A2RTY3 570 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 DAB1O75553 588 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 MAP4P27816 1152 aaKnown RBP16.57■□□□□ 0.24
CUX1-213ENST00000549414 SH3BGRP55822 239 aaPredicted RBP16.57■□□□□ 0.24
CUX1-213ENST00000549414 SLC25A3Q00325 362 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 PRKAA1Q13131 559 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 CCL14Q16627 93 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 OSBPL7Q9BZF2 842 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 CRTAMO95727 393 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 PIGRP01833 764 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 COL1A2P08123 1366 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 PTK2BQ14289 1009 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 SLC26A9Q7LBE3 791 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 TOP6BLQ8N6T0 577 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 KCTD4Q8WVF5 259 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 APBB2Q92870 758 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 ZNF333Q96JL9 665 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 CNDP1Q96KN2 507 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 PADI3Q9ULW8 664 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 DTNAQ9Y4J8 743 aa16.57■□□□□ 0.24
CUX1-213ENST00000549414 PFDN1O60925 122 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 RPLP2P05387 115 aaKnown RBP16.56■□□□□ 0.24
CUX1-213ENST00000549414 MYL4P12829 197 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 SH3D19Q5HYK7 790 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 STRADAQ7RTN6 431 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 ATAD1Q8NBU5 361 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 BRI3BPQ8WY22 251 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 ERLEC1Q96DZ1 483 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 CCDC167Q9P0B6 97 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 CRYMQ14894 314 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 SPRYD7Q5W111 196 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 CYGBQ8WWM9 190 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 PCYT2Q99447 389 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 SNX13Q9Y5W8 968 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 UBR2Q8IWV8 1755 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 UBDO15205 165 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 PKNOX1P55347 436 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 NCALDP61601 193 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 GAD2Q05329 585 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 PACS1Q6VY07 963 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 OTOP3Q7RTS5 596 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 SLC44A1Q8WWI5 657 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 CCDC126Q96EE4 140 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 CLPBQ9H078 707 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 BATF3Q9NR55 127 aa16.56■□□□□ 0.24
CUX1-213ENST00000549414 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.56■□□□□ 0.24
CUX1-213ENST00000549414 DNM1LO00429 736 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 BAIAP3O94812 1187 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 GUCA1CO95843 209 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 ARHGDIAP52565 204 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 ELAVL2Q12926 359 aaKnown RBP16.55■□□□□ 0.24
CUX1-213ENST00000549414 UBAP2LQ14157 1087 aaKnown RBP16.55■□□□□ 0.24
CUX1-213ENST00000549414 TEKT4Q8WW24 435 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 PIK3R5Q8WYR1 880 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms