RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 OLA1Q9NTK5 396 aaKnown RBP9.49□□□□□ -0.89
USP28-205ENST00000537706 ERVW-1Q9UQF0 538 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 STX6O43752 255 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 PHACTR2O75167 634 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 STAU1O95793 577 aaKnown RBP9.48□□□□□ -0.89
USP28-205ENST00000537706 P4HA1P13674 534 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 CD70P32970 193 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 ALCAMQ13740 583 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 Q6ZSR6 202 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 B3GNT8Q7Z7M8 397 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 OR6C4Q8NGE1 309 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 OR8D1Q8WZ84 308 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 KIAA1143Q96AT1 154 aaPredicted RBP9.48□□□□□ -0.89
USP28-205ENST00000537706 SPAG5Q96R06 1193 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 FOXP3Q9BZS1 431 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 PCIF1Q9H4Z3 704 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 KIAA1586Q9HCI6 787 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 FOXJ2Q9P0K8 574 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 DOLKQ9UPQ8 538 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 FBN2P35556 2912 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 MYH11P35749 1972 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 ITIH6Q6UXX5 1313 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 SPTBN1Q01082 2364 aaKnown RBP9.48□□□□□ -0.89
USP28-205ENST00000537706 TTC34A8MYJ7 566 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 EPB41L2O43491 1005 aaKnown RBP9.48□□□□□ -0.89
USP28-205ENST00000537706 TBL1XO60907 577 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 BEST1O76090 585 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 RPLP0P05388 317 aaKnown RBP9.48□□□□□ -0.89
USP28-205ENST00000537706 CCDC130P13994 396 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 PRLRP16471 622 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 ZNF18P17022 549 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 JUNDP17535 347 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 ITIH1P19827 911 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 ADORA2BP29275 332 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 DRAP1Q14919 205 aaPredicted RBP9.48□□□□□ -0.89
USP28-205ENST00000537706 ADGRF1Q5T601 910 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 NUGGCQ68CJ6 796 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 ACOT1Q86TX2 421 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 ZC3H3Q8IXZ2 948 aaKnown RBP9.48□□□□□ -0.89
USP28-205ENST00000537706 JPH3Q8WXH2 748 aaPredicted RBP9.48□□□□□ -0.89
USP28-205ENST00000537706 MARVELD3Q96A59 401 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 DDX50Q9BQ39 737 aaKnown RBP9.48□□□□□ -0.89
USP28-205ENST00000537706 TP53TG5Q9Y2B4 290 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 HS3ST3A1Q9Y663 406 aa9.48□□□□□ -0.89
USP28-205ENST00000537706 ARID1BQ8NFD5 2236 aaPredicted RBP9.48□□□□□ -0.89
USP28-205ENST00000537706 NBPF19A0A087WUL8 3843 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 A0A1W2PQU0 124 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 M0QYT0 321 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 IRAK2O43187 625 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 KIF20AO95235 890 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 GCNT3O95395 438 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 LIFP15018 202 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 GAP43P17677 238 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 DRD3P35462 400 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 RABIFP47224 123 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 KIF11P52732 1056 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 TRIP4Q15650 581 aaPredicted RBP9.47□□□□□ -0.89
USP28-205ENST00000537706 ZNF667Q5HYK9 610 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 ASB18Q6ZVZ8 466 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 ABI3BPQ7Z7G0 1075 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 HORMAD1Q86X24 394 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 SFR1Q86XK3 245 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 SLC35F3Q8IY50 421 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 TTC13Q8NBP0 860 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 CCDC112Q8NEF3 446 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 FAM131CQ96AQ9 280 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 MYO19Q96H55 970 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 PPP1R13BQ96KQ4 1090 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 CPEB1Q9BZB8 566 aaKnown RBP9.47□□□□□ -0.89
USP28-205ENST00000537706 LRRN3Q9H3W5 708 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 GULP1Q9UBP9 304 aa9.47□□□□□ -0.89
USP28-205ENST00000537706 HBS1LQ9Y450 684 aaKnown RBP9.47□□□□□ -0.89
USP28-205ENST00000537706 ZFC3H1O60293 1989 aaKnown RBP9.47□□□□□ -0.89
USP28-205ENST00000537706 TLN1Q9Y490 2541 aaKnown RBP9.46□□□□□ -0.89
USP28-205ENST00000537706 RNF224P0DH78 156 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 DLATP10515 647 aaKnown RBP9.46□□□□□ -0.89
USP28-205ENST00000537706 VARSP26640 1264 aaKnown RBP9.46□□□□□ -0.89
USP28-205ENST00000537706 UBA7P41226 1012 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 RECQLP46063 649 aaPredicted RBP9.46□□□□□ -0.89
USP28-205ENST00000537706 CCL7P80098 99 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 ECT2LQ008S8 904 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 CDC20Q12834 499 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 CDH18Q13634 790 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 MCM6Q14566 821 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 ZXDCQ2QGD7 858 aaPredicted RBP9.46□□□□□ -0.89
USP28-205ENST00000537706 DEFB109BQ30KR1 87 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 TCTN3Q6NUS6 607 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 KYAT3Q6YP21 454 aaKnown RBP9.46□□□□□ -0.89
USP28-205ENST00000537706 GPRIN1Q7Z2K8 1008 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 SCD5Q86SK9 330 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 CCDC13Q8IYE1 715 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 CACNA2D3Q8IZS8 1091 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 SDR16C5Q8N3Y7 309 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 NECAB1Q8N987 351 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 ZSWIM2Q8NEG5 633 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 FIBINQ8TAL6 211 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 RNF139Q8WU17 664 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 KLK6Q92876 244 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 NKD1Q969G9 470 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 RNF34Q969K3 372 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms