RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 LIN9Q5TKA1 542 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 NIPA1Q7RTP0 329 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 ZNF786Q8N393 782 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 HMGCLL1Q8TB92 370 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 RSAD2Q8WXG1 361 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 WNK4Q96J92 1243 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 SLC45A3Q96JT2 553 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 IL22Q9GZX6 179 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 PCIF1Q9H4Z3 704 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 IL20Q9NYY1 176 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 ENPP5Q9UJA9 477 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 EIF3LQ9Y262 564 aaKnown RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 DNAJC16Q9Y2G8 782 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 A3GALT2U3KPV4 340 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 RGSL1A5PLK6 1076 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 KCNQ2O43526 872 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 SEC24DO94855 1032 aaPredicted RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 UFL1O94874 794 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 ADRB2P07550 413 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 MPP1Q00013 466 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 TRAF2Q12933 501 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 CYP2A13Q16696 494 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 FSCBQ5H9T9 825 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 PDPK2PQ6A1A2 396 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 ZCCHC23Q6ZST2 131 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 SLC44A5Q8NCS7 719 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 CXorf38Q8TB03 319 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 PHF10Q8WUB8 498 aaKnown RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 CAPSLQ8WWF8 208 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 ATL1Q8WXF7 558 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 PPWD1Q96BP3 646 aaKnown RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 IKZF4Q9H2S9 585 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 MRPL47Q9HD33 250 aaKnown RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 GMIPQ9P107 970 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 WRAP73Q9P2S5 460 aaPredicted RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 TCAF2A6NFQ2 919 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 PLOD2O00469 737 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 PIGRP01833 764 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 KRT1P04264 644 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 HSPA8P11142 646 aaKnown RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 NAGAP17050 411 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 GRIK1P39086 918 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 IREB2P48200 963 aaKnown RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 GDF10P55107 478 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 CDH15P55291 814 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 GSTO1P78417 241 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 BASP1P80723 227 aaKnown RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 PMS2P3Q13401 168 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 PEX6Q13608 980 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 GPR107Q5VW38 600 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 TTC33Q6PID6 262 aaPredicted RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 MAP4K3Q8IVH8 894 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 SIX6OS1Q8N1H7 587 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 SLC2A14Q8TDB8 520 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 USP33Q8TEY7 942 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 DCAF4Q8WV16 495 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 ZNF518BQ9C0D4 1074 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 WDR12Q9GZL7 423 aaKnown RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 ZFYVE28Q9HCC9 887 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 ZBTB26Q9HCK0 441 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 FAM172BPA6NC97 362 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 PAPSS1O43252 624 aaPredicted RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 RASAL1O95294 804 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 CHEK2O96017 543 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 XRCC1P18887 633 aaPredicted RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 PCMT1P22061 227 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 MSX2P35548 267 aaPredicted RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 NSFP46459 744 aaKnown RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 TUFMP49411 452 aaKnown RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 NUDT2P50583 147 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 BNIP3Q12983 259 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 ZNF618Q5T7W0 954 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 TTBK2Q6IQ55 1244 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 MFSD7Q6UXD7 560 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 FKBP9P1Q75LS8 142 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 ERMP1Q7Z2K6 904 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 ABRAQ8N0Z2 381 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 GMCL1P1Q8NEA9 526 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 FEZF2Q8TBJ5 459 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 GRIN3AQ8TCU5 1115 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 RAB2BQ8WUD1 216 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 TGFBRAP1Q8WUH2 860 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 SIGLEC10Q96LC7 697 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 SNX18Q96RF0 628 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 SDCBP2Q9H190 292 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 PDLIM7Q9NR12 457 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 GPRC5DQ9NZD1 345 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 KAT6AQ92794 2004 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 OR5K3A6NET4 321 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 G3V2L1 256 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 TRIM38O00635 465 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 SHOXO15266 292 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 NPM3O75607 178 aaKnown RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 ALX3O95076 343 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 MBL2P11226 248 aaPredicted RBP8.54□□□□□ -1.04
CSMD1-213ENST00000523488 MLNP12872 115 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 MXI1P50539 228 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 ADAM17P78536 824 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 OCA2Q04671 838 aa8.54□□□□□ -1.04
CSMD1-213ENST00000523488 GRM1Q13255 1194 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms