RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 C12orf40Q86WS4 652 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 FAM72BQ86X60 149 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 CIR1Q86X95 450 aaPredicted RBP10.32□□□□□ -0.76
NUP54-203ENST00000504173 MFN1Q8IWA4 741 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 RHOT1Q8IXI2 618 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 ETFBKMTQ8IXQ9 262 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 ZNF683Q8IZ20 524 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 CCAR2Q8N163 923 aaKnown RBP10.32□□□□□ -0.76
NUP54-203ENST00000504173 CARNMT1Q8N4J0 409 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 ZNF557Q8N988 423 aaPredicted RBP10.32□□□□□ -0.76
NUP54-203ENST00000504173 LRRC57Q8N9N7 239 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 CD101Q93033 1021 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 P2RY11Q96G91 374 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 ALS2CR12Q96Q35 445 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 ZYG11BQ9C0D3 744 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 KLHL11Q9NVR0 708 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 DEC1Q9P2X7 70 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 AMFRQ9UKV5 643 aa10.32□□□□□ -0.76
NUP54-203ENST00000504173 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.31□□□□□ -0.76
NUP54-203ENST00000504173 DRGXA6NNA5 263 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 H0Y626 953 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 MAN2B1O00754 1011 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 DAPK3O43293 454 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 CLDN11O75508 207 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 CNTN5O94779 1100 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 KRT1P04264 644 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 ZNF806P0C7X5 589 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 SPINK2P20155 84 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 EPHB2P29323 1055 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 HTR7P34969 479 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 CNR2P34972 360 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 ARL4AP40617 200 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 OPRD1P41143 372 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 EIF2DP41214 584 aaKnown RBP10.31□□□□□ -0.76
NUP54-203ENST00000504173 SLC6A11P48066 632 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 DGKGP49619 791 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 ZNF135P52742 658 aaPredicted RBP10.31□□□□□ -0.76
NUP54-203ENST00000504173 CDH4P55283 916 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 CDH6P55285 790 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 KDSRQ06136 332 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 MTAPQ13126 283 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 SEMA3BQ13214 749 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 ZNF177Q13360 481 aaPredicted RBP10.31□□□□□ -0.76
NUP54-203ENST00000504173 SIM2Q14190 667 aaPredicted RBP10.31□□□□□ -0.76
NUP54-203ENST00000504173 PON2Q15165 354 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 CCDC6Q16204 474 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 DPYSL2Q16555 572 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 PREPLQ4J6C6 727 aaPredicted RBP10.31□□□□□ -0.76
NUP54-203ENST00000504173 ATP13A4Q4VNC1 1196 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 ALFQ53S48 1182 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 NAIF1Q69YI7 327 aaPredicted RBP10.31□□□□□ -0.76
NUP54-203ENST00000504173 TXNDC11Q6PKC3 985 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 ZNF852Q6ZMS4 543 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 TFAP2DQ7Z6R9 452 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 MAP7D3Q8IWC1 876 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 REXO1L1PQ8IX06 675 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 KCTD6Q8NC69 237 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 FAM3CQ92520 227 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 TRIM44Q96DX7 344 aaPredicted RBP10.31□□□□□ -0.76
NUP54-203ENST00000504173 CHFRQ96EP1 664 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 PNKPQ96T60 521 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 P2RY13Q9BPV8 354 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 IER2Q9BTL4 223 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 SCNM1Q9BWG6 230 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 SLC2A11Q9BYW1 496 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 CATSPERBQ9H7T0 1116 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 PCDH18Q9HCL0 1135 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 ARHGEF4Q9NR80 690 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 DDX56Q9NY93 547 aaKnown RBP10.31□□□□□ -0.76
NUP54-203ENST00000504173 MPP6Q9NZW5 540 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 PPARGC1AQ9UBK2 798 aaKnown RBP10.31□□□□□ -0.76
NUP54-203ENST00000504173 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.31□□□□□ -0.76
NUP54-203ENST00000504173 NEUROG3Q9Y4Z2 214 aa10.31□□□□□ -0.76
NUP54-203ENST00000504173 LRRD1A4D1F6 860 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 GOLGA6L9A6NEM1 432 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 EIF4E1BA6NMX2 242 aaKnown RBP10.3□□□□□ -0.76
NUP54-203ENST00000504173 TRIM24O15164 1050 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 FGF10O15520 208 aaPredicted RBP10.3□□□□□ -0.76
NUP54-203ENST00000504173 FTCDO95954 541 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 APODP05090 189 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 RHOCP08134 193 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 RHOQP17081 205 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 GOT1P17174 413 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 CD72P21854 359 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 HOXC13P31276 330 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 NOVA1P51513 510 aaKnown RBP10.3□□□□□ -0.76
NUP54-203ENST00000504173 GALK1P51570 392 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 GRSF1Q12849 480 aaKnown RBP eCLIP10.3□□□□□ -0.76
NUP54-203ENST00000504173 FZD5Q13467 585 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 PDK2Q15119 407 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 ARTNQ5T4W7 220 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 RNF43Q68DV7 783 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 RFX8Q6ZV50 586 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 ANKS1BQ7Z6G8 1248 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 NT5DC3Q86UY8 548 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 PROSER1Q86XN7 944 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 RTL3Q8N8U3 475 aaKnown RBP10.3□□□□□ -0.76
NUP54-203ENST00000504173 TRIM58Q8NG06 486 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 WFDC5Q8TCV5 224 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 RAPGEF5Q92565 580 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms