RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 FAM220BPB1ANY3 271 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 HTR1BP28222 390 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 RBL1P28749 1068 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 MAXP61244 160 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 SKP1P63208 163 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 CREMQ03060 361 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 FAAH2Q6GMR7 532 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 MFSD7Q6UXD7 560 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 FAM183BPQ6ZVS7 135 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 NIPA1Q7RTP0 329 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 FBXO25Q8TCJ0 367 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 GLMNQ92990 594 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 REPS1Q96D71 796 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 TMPRSS4Q9NRS4 437 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.83■□□□□ 0.127e-6■■■■□ 23.8
PTPRF-201ENST00000359947 PLSCR1O15162 318 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 HS6ST1O60243 411 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 SEC13P55735 322 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 NLRP9Q7RTR0 991 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 LZTR1Q8N653 840 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 BCL2L14Q9BZR8 327 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 PRKAB1Q9Y478 270 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 ZNF839A8K0R7 811 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 ISM1B1AKI9 464 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 H0Y858 1186 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 GRK2P25098 689 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 PEX5P50542 639 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 SMAD3P84022 425 aaKnown RBP15.83■□□□□ 0.12
PTPRF-201ENST00000359947 BNC2Q6ZN30 1099 aaPredicted RBP15.83■□□□□ 0.12
PTPRF-201ENST00000359947 CNPY4Q8N129 248 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 TRUB2O95900 331 aaKnown RBP15.83■□□□□ 0.12
PTPRF-201ENST00000359947 CHKAP35790 457 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 SRSF11Q05519 484 aaKnown RBP15.83■□□□□ 0.12
PTPRF-201ENST00000359947 MCL1Q07820 350 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 BIKQ13323 160 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 ZNF655Q8N720 491 aaPredicted RBP15.83■□□□□ 0.12
PTPRF-201ENST00000359947 RERGQ96A58 199 aaPredicted RBP15.83■□□□□ 0.12
PTPRF-201ENST00000359947 TBCDQ9BTW9 1192 aa15.83■□□□□ 0.12
PTPRF-201ENST00000359947 GPN3Q9UHW5 284 aaPredicted RBP15.83■□□□□ 0.12
PTPRF-201ENST00000359947 A0A088AWK7 358 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 B4GALT5O43286 388 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 PEX10O60683 326 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 DNTTP04053 509 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 ZNF10P21506 573 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-201ENST00000359947 BRCC3P46736 316 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 RASAL3Q86YV0 1011 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 SYT12Q8IV01 421 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 PXDNQ92626 1479 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 DNPEPQ9ULA0 475 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 BCL9O00512 1426 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 CSH1P0DML2 217 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 CSH2P0DML3 217 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 PGAM1P18669 254 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 PSMB4P28070 264 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 IRX1P78414 480 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-201ENST00000359947 ATP13A3Q9H7F0 1226 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 NMRAL1Q9HBL8 299 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 KLHL1Q9NR64 748 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 TRHDEQ9UKU6 1024 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 TRBV23OR9-2A0A075B6M9 112 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 GALNT3Q14435 633 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 DAB2IPQ5VWQ8 1189 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 MTDHQ86UE4 582 aaKnown RBP15.82■□□□□ 0.12
PTPRF-201ENST00000359947 ING5Q8WYH8 240 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 SH3GL1Q99961 368 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 ARHGAP20Q9P2F6 1191 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 PAEPP09466 180 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 PSRC1Q6PGN9 363 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-201ENST00000359947 CRTC3Q6UUV7 619 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 ZMYND8Q9ULU4 1186 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-201ENST00000359947 C1orf232A0A0U1RR37 186 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 CCT8L1PA6NM43 557 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 SARSP49591 514 aaKnown RBP15.82■□□□□ 0.12
PTPRF-201ENST00000359947 GPR158Q5T848 1215 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 UXS1Q8NBZ7 420 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 PHGDHO43175 533 aaKnown RBP15.82■□□□□ 0.12
PTPRF-201ENST00000359947 EPORP19235 508 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 CNTFP26441 200 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 RCN1Q15293 331 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 SPANXN3Q5MJ09 141 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 C16orf46Q6P387 395 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 WDR59Q6PJI9 974 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 DSELQ8IZU8 1212 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 OR56A4Q8NGH8 313 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 HPCAL1P37235 193 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 KCNA10Q16322 511 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 PFKFB4Q16877 469 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 AP5B1Q2VPB7 878 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 CERS5Q8N5B7 392 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 WNT8BQ93098 351 aa15.82■□□□□ 0.12
PTPRF-201ENST00000359947 COPG1Q9Y678 874 aaKnown RBP15.82■□□□□ 0.12
PTPRF-201ENST00000359947 A0A096LPK6 155 aa15.81■□□□□ 0.12
PTPRF-201ENST00000359947 VAV1P15498 845 aa15.81■□□□□ 0.12
PTPRF-201ENST00000359947 NOS2P35228 1153 aa15.81■□□□□ 0.12
PTPRF-201ENST00000359947 FER1L4A9Z1Z3 1794 aa15.81■□□□□ 0.12
PTPRF-201ENST00000359947 ATP12AP54707 1039 aa15.81■□□□□ 0.12
PTPRF-201ENST00000359947 NTRK3Q16288 839 aa15.81■□□□□ 0.12
PTPRF-201ENST00000359947 C2orf73Q8N5S3 287 aaPredicted RBP15.81■□□□□ 0.12
PTPRF-201ENST00000359947 LENG1Q96BZ8 264 aaPredicted RBP15.81■□□□□ 0.12
PTPRF-201ENST00000359947 CAPNS2Q96L46 248 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms