RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 CCZ1P86791 482 aaPredicted RBP13.04□□□□□ -0.32
USP47-202ENST00000339865 FRG1Q14331 258 aaKnown RBP13.04□□□□□ -0.32
USP47-202ENST00000339865 PDK3Q15120 406 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 PDCD4Q53EL6 469 aaKnown RBP13.04□□□□□ -0.32
USP47-202ENST00000339865 SHC4Q6S5L8 630 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 LRRC69Q6ZNQ3 347 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 SPAG16Q8N0X2 631 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 DNAJC11Q9NVH1 559 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 DPP3Q9NY33 737 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 STOX2Q9P2F5 926 aaPredicted RBP13.04□□□□□ -0.32
USP47-202ENST00000339865 TNRQ92752 1358 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 RGSL1A5PLK6 1076 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 CBX6O95503 412 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 ZC3H7AQ8IWR0 971 aaKnown RBP13.04□□□□□ -0.32
USP47-202ENST00000339865 SKA1Q96BD8 255 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 ABCB9Q9NP78 766 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 TMEM51Q9NW97 253 aa13.04□□□□□ -0.32
USP47-202ENST00000339865 MYH1P12882 1939 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 MYH2Q9UKX2 1941 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 MYH4Q9Y623 1939 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 M0R036 132 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 RECQL5O94762 991 aaPredicted RBP13.03□□□□□ -0.32
USP47-202ENST00000339865 THRBP10828 461 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 ALG11Q2TAA5 492 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 AADACL4Q5VUY2 407 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 C9orf131Q5VYM1 1079 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 ARMC10Q8N2F6 343 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 REPS1Q96D71 796 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 CLIP3Q96DZ5 547 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 CHIAQ9BZP6 476 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 CCDC86Q9H6F5 360 aaKnown RBP13.03□□□□□ -0.32
USP47-202ENST00000339865 SYNJ1O43426 1573 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 STK36Q9NRP7 1315 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 RSL1D1O76021 490 aaKnown RBP13.03□□□□□ -0.32
USP47-202ENST00000339865 NFKB1P19838 968 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 MAN2A2P49641 1150 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 SV2CQ496J9 727 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 PIK3R6Q5UE93 754 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 AGMOQ6ZNB7 445 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 BRSK2Q8IWQ3 736 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 CSGALNACT1Q8TDX6 532 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 NAT9Q9BTE0 207 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 PDGFCQ9NRA1 345 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 RAPGEFL1Q9UHV5 662 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 TOB2Q14106 344 aaPredicted RBP13.03□□□□□ -0.32
USP47-202ENST00000339865 NECTIN1Q15223 517 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 GPAT3Q53EU6 434 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 STOX1Q6ZVD7 989 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 PCDH19Q8TAB3 1148 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 OXNAD1Q96HP4 312 aaPredicted RBP13.03□□□□□ -0.32
USP47-202ENST00000339865 MARK4Q96L34 752 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.03□□□□□ -0.32
USP47-202ENST00000339865 PCDHA10Q9Y5I2 948 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 INSRP06213 1382 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 PRAG1Q86YV5 1406 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 TSPAN1O60635 241 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 PCSK1P29120 753 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 SCNN1AP37088 669 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 NEK3P51956 506 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 TDRD10Q5VZ19 366 aaKnown RBP13.03□□□□□ -0.32
USP47-202ENST00000339865 RASGEF1AQ8N9B8 481 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 KAT5Q92993 513 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 ITCHQ96J02 903 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 PCDHGA10Q9Y5H3 936 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 DGKBQ9Y6T7 804 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 TTC3P53804 2025 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 METTL21EPA6NDL7 271 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 FSBPO95073 299 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 SERPINF2P08697 491 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 CYP4B1P13584 511 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 GEMP55040 296 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 METTL6Q8TCB7 284 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 KCTD4Q8WVF5 259 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 PHF20Q9BVI0 1012 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 KNTC1P50748 2209 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 ARL5CA6NH57 179 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 ZSCAN5BA6NJL1 495 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 RNASEH1O60930 286 aaKnown RBP13.03□□□□□ -0.32
USP47-202ENST00000339865 PCDH8O95206 1070 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 C6orf222P0C671 652 aaPredicted RBP13.03□□□□□ -0.32
USP47-202ENST00000339865 KLRC1P26715 233 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 ZNF234Q14588 700 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 MCFD2Q8NI22 146 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 MAFIPQ8WZ33 124 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 ZKSCAN4Q969J2 545 aaPredicted RBP13.03□□□□□ -0.32
USP47-202ENST00000339865 RPRD1AQ96P16 312 aaPredicted RBP13.03□□□□□ -0.32
USP47-202ENST00000339865 CDADC1Q9BWV3 514 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 SPON1Q9HCB6 807 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 MORF4L1Q9UBU8 362 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 TBC1D30Q9Y2I9 924 aa13.03□□□□□ -0.32
USP47-202ENST00000339865 BHMG1C9JSJ3 638 aaPredicted RBP13.02□□□□□ -0.32
USP47-202ENST00000339865 SLC33A1O00400 549 aaPredicted RBP13.02□□□□□ -0.32
USP47-202ENST00000339865 VIL1P09327 827 aaKnown RBP13.02□□□□□ -0.32
USP47-202ENST00000339865 SLC11A2P49281 568 aa13.02□□□□□ -0.32
USP47-202ENST00000339865 TUFMP49411 452 aaKnown RBP13.02□□□□□ -0.32
USP47-202ENST00000339865 CDC42P60953 191 aa13.02□□□□□ -0.32
USP47-202ENST00000339865 MPOP05164 745 aa13.02□□□□□ -0.32
USP47-202ENST00000339865 GALK1P51570 392 aa13.02□□□□□ -0.32
USP47-202ENST00000339865 SLC5A9Q2M3M2 681 aa13.02□□□□□ -0.32
USP47-202ENST00000339865 SLCO6A1Q86UG4 719 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms