RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 KCNK4Q9NYG8 393 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 NLGN3Q9NZ94 848 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 TPX2Q9ULW0 747 aaKnown RBP12.19□□□□□ -0.46
CLK3-222ENST00000568232 DMTF1Q9Y222 760 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 MAN2B2Q9Y2E5 1009 aa12.19□□□□□ -0.46
CLK3-222ENST00000568232 EDDM13A0A1B0GTR0 161 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 PRAMEF26H0Y7S4 382 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 K7ESM1 405 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 EIF3DO15371 548 aaKnown RBP eCLIP12.18□□□□□ -0.46
CLK3-222ENST00000568232 NOBOXO60393 691 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 ADH1BP00325 375 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 ITGB2P05107 769 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 ALPPL2P10696 532 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 CD58P19256 250 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 TKTL1P51854 596 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 ZNF445P59923 1031 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 CLDN10P78369 228 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 INCA1Q0VD86 236 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 DRAP1Q14919 205 aaPredicted RBP12.18□□□□□ -0.46
CLK3-222ENST00000568232 TBR1Q16650 682 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 ZNF394Q53GI3 561 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 GUSBP11Q6P575 273 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 CCDC73Q6ZRK6 1079 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 BHLHA9Q7RTU4 235 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 PIGZQ86VD9 579 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 PTRH1Q86Y79 214 aaKnown RBP12.18□□□□□ -0.46
CLK3-222ENST00000568232 PDILTQ8N807 584 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 FIBINQ8TAL6 211 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 RPL10LQ96L21 214 aaKnown RBP12.18□□□□□ -0.46
CLK3-222ENST00000568232 PSMG3-AS1Q96PY0 264 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 SEMA3CQ99985 751 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 SARDHQ9UL12 918 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 SRPRBQ9Y5M8 271 aaKnown RBP12.18□□□□□ -0.46
CLK3-222ENST00000568232 TLN1Q9Y490 2541 aaKnown RBP12.18□□□□□ -0.46
CLK3-222ENST00000568232 COL27A1Q8IZC6 1860 aaPredicted RBP12.18□□□□□ -0.46
CLK3-222ENST00000568232 AHCTF1Q8WYP5 2266 aa12.18□□□□□ -0.46
CLK3-222ENST00000568232 USP9YO00507 2555 aaPredicted RBP12.18□□□□□ -0.46
CLK3-222ENST00000568232 NOTCH2Q04721 2471 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 CLEC18AA5D8T8 446 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 SCAMP1O15126 338 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 SLC31A1O15431 190 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 PLRG1O43660 514 aaKnown RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 ASS1P00966 412 aaKnown RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 ASLP04424 464 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 SLFN14P0C7P3 912 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 PRLRP16471 622 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 TXLNAP40222 546 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 STK19P49842 368 aaPredicted RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 AP3M2P53677 418 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 CYP4F2P78329 520 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 ZNF177Q13360 481 aaPredicted RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 SERINC3Q13530 473 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 SKIDA1Q1XH10 827 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 KMT5BQ4FZB7 885 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 FAM133BQ5BKY9 247 aaKnown RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 PITRM1Q5JRX3 1037 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 RAB41Q5JT25 222 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 CLEC18BQ6UXF7 455 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 RBM44Q6ZP01 1051 aaKnown RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 EFL1Q7Z2Z2 1120 aaKnown RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 TRIM69Q86WT6 500 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 CARNMT1Q8N4J0 409 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 TMEM145Q8NBT3 493 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 CLEC18CQ8NCF0 446 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 OR13H1Q8NG92 308 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 WDR36Q8NI36 951 aaKnown RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 PRICKLE1Q96MT3 831 aaPredicted RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 NOX5Q96PH1 765 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 CALN1Q9BXU9 219 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 ULBP1Q9BZM6 244 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 EPN3Q9H201 632 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 APOBEC3GQ9HC16 384 aaKnown RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 FZD3Q9NPG1 666 aa12.17□□□□□ -0.46
CLK3-222ENST00000568232 HBS1LQ9Y450 684 aaKnown RBP12.17□□□□□ -0.46
CLK3-222ENST00000568232 UBE4BO95155 1302 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 ITIH6Q6UXX5 1313 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 BLACEA4D250 179 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 TULP2O00295 520 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 PPFIA2O75334 1257 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 ZBED1O96006 694 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 HLA-DRAP01903 254 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 RPN1P04843 607 aaKnown RBP12.16□□□□□ -0.46
CLK3-222ENST00000568232 ITGA2BP08514 1039 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 SFTPCP11686 197 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 TRIM21P19474 475 aaKnown RBP12.16□□□□□ -0.46
CLK3-222ENST00000568232 SLC5A2P31639 672 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 PDX1P52945 283 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 INHBCP55103 352 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 CLDN2P57739 230 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 RPS24P62847 133 aaKnown RBP12.16□□□□□ -0.46
CLK3-222ENST00000568232 ECT2LQ008S8 904 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 CNTN1Q12860 1018 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 CLCA4Q14CN2 919 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 ZACNQ401N2 412 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 SETMARQ53H47 684 aaPredicted RBP12.16□□□□□ -0.46
CLK3-222ENST00000568232 FAM26FQ5R3K3 315 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 PERM1Q5SV97 790 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 MPP7Q5T2T1 576 aa12.16□□□□□ -0.46
CLK3-222ENST00000568232 PM20D1Q6GTS8 502 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms