RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 COG4Q9H9E3 785 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 ZNF212Q9UDV6 495 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 DCDC2Q9UHG0 476 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 ZCWPW2A0A1B0GU75 182 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 USP17L7P0C7H9 530 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 MLNP12872 115 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 SNX16P57768 344 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 ABCE1P61221 599 aaKnown RBP13.19□□□□□ -0.3
LDLR-207ENST00000558013 DGKDQ16760 1214 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 PDPK2PQ6A1A2 396 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 ISLR2Q6UXK2 745 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 PPFIBP2Q8ND30 876 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 SLC26A7Q8TE54 656 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 HSFY1Q96LI6 401 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 OR52B2Q96RD2 323 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 MED10Q9BTT4 135 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 ULBP1Q9BZM6 244 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 LRRC4Q9HBW1 653 aa13.19□□□□□ -0.3
LDLR-207ENST00000558013 XPO1O14980 1071 aaKnown RBP13.18□□□□□ -0.3
LDLR-207ENST00000558013 DCLK1O15075 740 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 GP5P40197 560 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 GLRBP48167 497 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 GLUD2P49448 558 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 TAF6P49848 677 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 PDK1Q15118 436 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 DUSP28Q4G0W2 176 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 UBXN11Q5T124 520 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 CYS1Q717R9 158 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 DEFB107AQ8IZN7 70 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 NPLOC4Q8TAT6 608 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 USP33Q8TEY7 942 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 APBB2Q92870 758 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 MLPHQ9BV36 600 aaPredicted RBP13.18□□□□□ -0.3
LDLR-207ENST00000558013 VANGL2Q9ULK5 521 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 DERAQ9Y315 318 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 COL1A2P08123 1366 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 LAMA3Q16787 3333 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 HACD1B0YJ81 288 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 NEMP1O14524 444 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 NPR3P17342 541 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 PTPN1P18031 435 aaKnown RBP13.18□□□□□ -0.3
LDLR-207ENST00000558013 CNTFP26441 200 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 ADRA1BP35368 520 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 AVPR1AP37288 418 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 PSEN1P49768 467 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 COPAP53621 1224 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 GRIK3Q13003 919 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 SNX17Q15036 470 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 TRMT5Q32P41 509 aaKnown RBP13.18□□□□□ -0.3
LDLR-207ENST00000558013 DNAL1Q4LDG9 190 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 IRGCQ6NXR0 463 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 SIX6OS1Q8N1H7 587 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 RAB3IL1Q8TBN0 382 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 NT5C3BQ969T7 300 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 EMID1Q96A84 441 aaPredicted RBP13.18□□□□□ -0.3
LDLR-207ENST00000558013 ADAMTS6Q9UKP5 1117 aa13.18□□□□□ -0.3
LDLR-207ENST00000558013 TRIP12Q14669 1992 aaPredicted RBP13.17□□□□□ -0.3
LDLR-207ENST00000558013 A0A096LPK6 155 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 RBM47A0AV96 593 aaKnown RBP13.17□□□□□ -0.3
LDLR-207ENST00000558013 MYBPHLA2RUH7 354 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 F8W8V4 182 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 G3V2L1 256 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 TK2O00142 265 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 STK10O94804 968 aaKnown RBP13.17□□□□□ -0.3
LDLR-207ENST00000558013 NOS2P35228 1153 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 ACADSBP45954 432 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 ZNF460Q14592 562 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 CMPK2Q5EBM0 449 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 PPM1LQ5SGD2 360 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 SMG8Q8ND04 991 aaKnown RBP13.17□□□□□ -0.3
LDLR-207ENST00000558013 PPP4R1Q8TF05 950 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 GATA6Q92908 595 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 WNT8BQ93098 351 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 MAML3Q96JK9 1138 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 WDR6Q9NNW5 1121 aaKnown RBP13.17□□□□□ -0.3
LDLR-207ENST00000558013 CRTAC1Q9NQ79 661 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 GDAP2Q9NXN4 497 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 NDE1Q9NXR1 346 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 BTBD19C9JJ37 291 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 PTGESO14684 152 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 PHGDHO43175 533 aaKnown RBP13.17□□□□□ -0.3
LDLR-207ENST00000558013 NCAM1P13591 858 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 NMBRP28336 390 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 CDC16Q13042 620 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 SNAPC2Q13487 334 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 CUL3Q13618 768 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 CCNIQ14094 377 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 ANKRD20A4Q4UJ75 823 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 OTOP3Q7RTS5 596 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 KDELC2Q7Z4H8 507 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 SPDYE1Q8NFV5 336 aaPredicted RBP13.17□□□□□ -0.3
LDLR-207ENST00000558013 ACMSDQ8TDX5 336 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 RBBP8Q99708 897 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 HNRNPABQ99729 332 aaKnown RBP13.17□□□□□ -0.3
LDLR-207ENST00000558013 EBF3Q9H4W6 596 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 IARS2Q9NSE4 1012 aaKnown RBP13.17□□□□□ -0.3
LDLR-207ENST00000558013 IPPQ9Y573 584 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 SMIM24O75264 130 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 C2P06681 752 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 NFKB1P19838 968 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms