RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 LDHAL6AQ6ZMR3 332 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 MRPL10Q7Z7H8 261 aaKnown RBP5.07□□□□□ -1.6
SCFD1-221ENST00000556534 FAM110DQ8TAY7 271 aaPredicted RBP5.07□□□□□ -1.6
SCFD1-221ENST00000556534 SCARB1Q8WTV0 552 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 GOLGA1Q92805 767 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 EME1Q96AY2 570 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 TBC1D20Q96BZ9 403 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 SDCCAG3Q96C92 435 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 MSI2Q96DH6 328 aaKnown RBP5.07□□□□□ -1.6
SCFD1-221ENST00000556534 CLMNQ96JQ2 1002 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 TRMOQ9BU70 441 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 CLPBQ9H078 707 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 PLEKHA2Q9HB19 425 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 ZBTB40Q9NUA8 1239 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 KIF17Q9P2E2 1029 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 BAG5Q9UL15 447 aa5.07□□□□□ -1.6
SCFD1-221ENST00000556534 ZNF521Q96K83 1311 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 ZNF814B7Z6K7 855 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 RHODO00212 210 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 NEURL1O76050 574 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 TNFRSF1BP20333 461 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 SMTNL2Q2TAL5 461 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 GXYLT1Q4G148 440 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 C10orf76Q5T2E6 689 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 SLC30A9Q6PML9 568 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 RFX8Q6ZV50 586 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 ANKS1BQ7Z6G8 1248 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 TMEM200AQ86VY9 491 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 SCN4BQ8IWT1 228 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 ARFGAP1Q8N6T3 406 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 SLC44A5Q8NCS7 719 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 ZNF548Q8NEK5 533 aaPredicted RBP5.06□□□□□ -1.6
SCFD1-221ENST00000556534 MPLKIPQ8TAP9 179 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 FAM167BQ9BTA0 163 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 AAMDCQ9H7C9 122 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 SPAG4Q9NPE6 437 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 ITM2CQ9NQX7 267 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 ARL15Q9NXU5 204 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 LAMP3Q9UQV4 416 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 GPR52Q9Y2T5 361 aa5.06□□□□□ -1.6
SCFD1-221ENST00000556534 A0A1W2PPC1 479 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 IRAK2O43187 625 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 MSI1O43347 362 aaKnown RBP5.05□□□□□ -1.6
SCFD1-221ENST00000556534 ATG13O75143 517 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 NFATC1O95644 943 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 FGF2P09038 288 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 PKMP14618 531 aaKnown RBP5.05□□□□□ -1.6
SCFD1-221ENST00000556534 PNPLA4P41247 253 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 NR4A2P43354 598 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 ACTR2P61160 394 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 GALNT3Q14435 633 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 DLGAP5Q15398 846 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 ZNF484Q5JVG2 852 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 PIK3CD-AS1Q5SR53 167 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 CYB5R4Q7L1T6 521 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 RNF144BQ7Z419 303 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 KLBQ86Z14 1044 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 ANKRD42Q8N9B4 389 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 FSIP1Q8NA03 581 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 AFG1LQ8WV93 481 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 WDR83Q9BRX9 315 aaKnown RBP5.05□□□□□ -1.6
SCFD1-221ENST00000556534 Q9N2J8 555 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 SEMA4BQ9NPR2 832 aaPredicted RBP5.05□□□□□ -1.6
SCFD1-221ENST00000556534 RASSF1Q9NS23 344 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 TMEM248Q9NWD8 314 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 PCDHA12Q9UN75 941 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 TNFSF13BQ9Y275 285 aa5.05□□□□□ -1.6
SCFD1-221ENST00000556534 DPPA5A6NC42 116 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 A6NNC1 897 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 FOXO6A8MYZ6 492 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 PRPF4O43172 522 aaKnown RBP eCLIP5.04□□□□□ -1.6
SCFD1-221ENST00000556534 HOXB9P17482 250 aaPredicted RBP5.04□□□□□ -1.6
SCFD1-221ENST00000556534 LMO1P25800 156 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 TYK2P29597 1187 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 AVPR2P30518 371 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 STAT1P42224 750 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 AARSP49588 968 aaKnown RBP eCLIP5.04□□□□□ -1.6
SCFD1-221ENST00000556534 RBM5P52756 815 aaKnown RBP eCLIP5.04□□□□□ -1.6
SCFD1-221ENST00000556534 ARL4CP56559 192 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 ALKBH1Q13686 389 aaKnown RBP5.04□□□□□ -1.6
SCFD1-221ENST00000556534 LAMB3Q13751 1172 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 THOC5Q13769 683 aaKnown RBP5.04□□□□□ -1.6
SCFD1-221ENST00000556534 INPP5JQ15735 1006 aaPredicted RBP5.04□□□□□ -1.6
SCFD1-221ENST00000556534 GPR162Q16538 588 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 ADCK5Q3MIX3 580 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 INO80DQ53TQ3 878 aaPredicted RBP5.04□□□□□ -1.6
SCFD1-221ENST00000556534 C6orf10Q5SRN2 563 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 MTFR2Q6P444 385 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 HERC6Q8IVU3 1022 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 FTSJ3Q8IY81 847 aaKnown RBP5.04□□□□□ -1.6
SCFD1-221ENST00000556534 VPS52Q8N1B4 723 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 TMEM217Q8N7C4 229 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 C2CD4CQ8TF44 421 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 KCNJ9Q92806 393 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 FCRL4Q96PJ5 515 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 RMI1Q9H9A7 625 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 CHODLQ9H9P2 273 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 KLQ9UEF7 1012 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 SLC25A13Q9UJS0 675 aa5.04□□□□□ -1.6
SCFD1-221ENST00000556534 HS3ST3B1Q9Y662 390 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms