RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 MRGBPQ9NV56 204 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 DSEQ9UL01 958 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 AIM2O14862 343 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 MSH4O15457 936 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 CLPXO76031 633 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 MAP4P27816 1152 aaKnown RBP8.56□□□□□ -1.04
CSMD1-213ENST00000523488 RPL22P35268 128 aaKnown RBP8.56□□□□□ -1.04
CSMD1-213ENST00000523488 GCLMP48507 274 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 SCARA3Q6AZY7 606 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 ANKRD13BQ86YJ7 626 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 LGI2Q8N0V4 545 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 PARP8Q8N3A8 854 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 PDZD8Q8NEN9 1154 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 CALML6Q8TD86 181 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 ATP2A3Q93084 1043 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 AKT1S1Q96B36 256 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 SDCCAG3Q96C92 435 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 EIF2AK1Q9BQI3 630 aaKnown RBP8.56□□□□□ -1.04
CSMD1-213ENST00000523488 SH2D3AQ9BRG2 576 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 C1orf50Q9BV19 199 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 EHD1Q9H4M9 534 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 PCDHGC3Q9UN70 934 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 TCRBV7S3A2A0A539 114 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 TRIM49D1C9J1S8 452 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 B4GALT4O60513 344 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 KLHL41O60662 606 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 PLIN3O60664 434 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 ZMPSTE24O75844 475 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 BBOX1O75936 387 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 SUPT7LO94864 414 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 SERPINE1P05121 402 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 P4HBP07237 508 aaKnown RBP8.56□□□□□ -1.04
CSMD1-213ENST00000523488 MYL3P08590 195 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 KRT10P13645 584 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 EIF2AK2P19525 551 aaKnown RBP8.56□□□□□ -1.04
CSMD1-213ENST00000523488 TPSB2P20231 275 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 CXCR2P25025 360 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 IFITM3Q01628 133 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 GAD2Q05329 585 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 TPSAB1Q15661 275 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 FAM45BPQ6NSW5 357 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 C14orf80Q86SX3 495 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 CAND1Q86VP6 1230 aaKnown RBP8.56□□□□□ -1.04
CSMD1-213ENST00000523488 MCF2L2Q86YR7 1114 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 DCP2Q8IU60 420 aaKnown RBP8.56□□□□□ -1.04
CSMD1-213ENST00000523488 EPHX4Q8IUS5 362 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 FAM45AQ8TCE6 357 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 TAMM41Q96BW9 452 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 ASB2Q96Q27 587 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 CSF3RQ99062 836 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 ZNF395Q9H8N7 513 aaPredicted RBP8.56□□□□□ -1.04
CSMD1-213ENST00000523488 KLHL11Q9NVR0 708 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 TMEM181Q9P2C4 612 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 SEPT3Q9UH03 358 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 IP6K2Q9UHH9 426 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 SATB2Q9UPW6 733 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 FRMPD2Q68DX3 1309 aaPredicted RBP8.56□□□□□ -1.04
CSMD1-213ENST00000523488 PHIPQ8WWQ0 1821 aa8.56□□□□□ -1.04
CSMD1-213ENST00000523488 ISPDA4D126 451 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 LRRIQ4A6NIV6 560 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 FAM86B1E9PN63 330 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 RIMBP2O15034 1052 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 ITGBL1O95965 494 aaPredicted RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 FAM86B2P0C5J1 330 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 UBL4AP11441 157 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 IL1R1P14778 569 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 NUDT1P36639 197 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 GRIA3P42263 894 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 YWHAZP63104 245 aaKnown RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 ADAMTSL2Q86TH1 951 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 FAM178BQ8IXR5 827 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 SLC15A4Q8N697 577 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 ARFGAP1Q8N6T3 406 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 AFG1LQ8WV93 481 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 KAT5Q92993 513 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 CLIP3Q96DZ5 547 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 SH3YL1Q96HL8 342 aaPredicted RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 ZC3H12CQ9C0D7 883 aaKnown RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 TRPV6Q9H1D0 765 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 SMARCAD1Q9H4L7 1026 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 CNGB3Q9NQW8 809 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 AGPAT4Q9NRZ5 378 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 VPS51Q9UID3 782 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 ITM2BQ9Y287 266 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 PCDHGA7Q9Y5G6 932 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 PCDHGA11Q9Y5H2 935 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 NOTOA8MTQ0 251 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 TARM1B6A8C7 271 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 H0YAE9 185 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 TPPPO94811 219 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 FOSP01100 380 aaPredicted RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 RALBP11234 206 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 EEF1DP29692 281 aaKnown RBP8.55□□□□□ -1.04
CSMD1-213ENST00000523488 DSG3P32926 999 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 ATP4BP51164 291 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 THOP1P52888 689 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 PRKAA2P54646 552 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 LRP8Q14114 963 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 RAB39AQ14964 217 aa8.55□□□□□ -1.04
CSMD1-213ENST00000523488 AARS2Q5JTZ9 985 aaKnown RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms