RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 GNPTGQ9UJJ9 305 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 A0A087X0T9 212 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 NOTOA8MTQ0 251 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 OR6A2O95222 327 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 PRG2P13727 222 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 SCNN1DP51172 638 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 SKP1P63208 163 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 SHQ1Q6PI26 577 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 SPOCD1Q6ZMY3 1216 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 OFCC1Q8IZS5 231 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 GPATCH1Q9BRR8 931 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 TSR3Q9UJK0 312 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 NCAPD2Q15021 1401 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 ASXL2Q76L83 1435 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 HACD1B0YJ81 288 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 NUDT17P0C025 328 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 USP17L8P0C7I0 530 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 COX4I1P13073 169 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 NR2C2P49116 596 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 PRKCEQ02156 737 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 CDH17Q12864 832 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 ACAP1Q15027 740 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 ZCCHC9Q8N567 271 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 KBTBD7Q8WVZ9 684 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 CINPQ9BW66 212 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 PUS3Q9BZE2 481 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 COA1Q9GZY4 146 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 ANKHQ9HCJ1 492 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 ANKEF1Q9NU02 776 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 MAGEL2Q9UJ55 1249 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 FLT1P17948 1338 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 USP17L3A6NCW0 530 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 USP17L4A6NCW7 530 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 SMIM22K7EJ46 135 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 MPZL2O60487 215 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 PLA2G6O60733 806 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 NAMPTP43490 491 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 ARF5P84085 180 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 TRIM32Q13049 653 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 CNSTQ6PJW8 725 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 CRTC3Q6UUV7 619 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 USP17L1Q7RTZ2 530 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 TBC1D10CQ8IV04 446 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 SLITRK4Q8IW52 837 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 FAM20CQ8IXL6 584 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 AKAP1Q92667 903 aaKnown RBP eCLIP11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 HOPXQ9BPY8 73 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 SCAF8Q9UPN6 1271 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 DNAJA2O60884 412 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 IDH2P48735 452 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 ELP6Q0PNE2 266 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 CBFBQ13951 182 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 NRF1Q16656 503 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 SIRT2Q8IXJ6 389 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 C15orf40Q8WUR7 153 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 THAP2Q9H0W7 228 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 TRPV5Q9NQA5 729 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 VPS4AQ9UN37 437 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 SIK3Q9Y2K2 1263 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 DHRS12A0PJE2 317 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 RGS10O43665 173 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 MAGEC1O60732 1142 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 SCGNO76038 276 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 FBXO21O94952 628 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 FAM153BP0C7A2 387 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 CYP2A7P20853 494 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 SP100P23497 879 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 PSMA1P25786 263 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 DSG3P32926 999 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 TWF1Q12792 350 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 SIPA1Q96FS4 1042 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 AP1S3Q96PC3 154 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 VPS35Q96QK1 796 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 RIT2Q99578 217 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 MTMR12Q9C0I1 747 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 FAM49AQ9H0Q0 323 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 PLK2Q9NYY3 685 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 TRPC4Q9UBN4 977 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 MRPS7Q9Y2R9 242 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 CAPN6Q9Y6Q1 641 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 KCNQ3O43525 872 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 MAGEA8P43361 318 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 GPR15P49685 360 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 PLCL1Q15111 1095 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 PCSK7Q16549 785 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 CYP2R1Q6VVX0 501 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 RPTNQ6XPR3 784 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 RASAL3Q86YV0 1011 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 EGFL6Q8IUX8 553 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 DENND6BQ8NEG7 585 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 YTHDF1Q9BYJ9 559 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 KIAA1683Q9H0B3 1180 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 NINJ2Q9NZG7 142 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 IGSF9BQ9UPX0 1349 aa11.41□□□□□ -0.58
LIMCH1-217ENST00000512946 RB1P06400 928 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 GSTT2BP0CG30 244 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 UMPSP11172 480 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 NMT1P30419 496 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 ATP7BP35670 1465 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 MNDAP41218 407 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms