RNA–Protein interactions for RNA: ENST00000485367.5

DDX56-212, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 1,781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-212ENST00000485367 HTR3DQ70Z44 454 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 MIB1Q86YT6 1006 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 SFTPA1Q8IWL2 248 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 TRIM59Q8IWR1 403 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 PPM1KQ8N3J5 372 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 CAMKK1Q8N5S9 505 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 UBR7Q8N806 425 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 NAP1L3Q99457 506 aaPredicted RBP11.11□□□□□ -0.63
DDX56-212ENST00000485367 TMEM109Q9BVC6 243 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 NLRC4Q9NPP4 1024 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 SPHK2Q9NRA0 654 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 CLIC5Q9NZA1 410 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 NOP53Q9NZM5 478 aaKnown RBP11.11□□□□□ -0.63
DDX56-212ENST00000485367 HESX1Q9UBX0 185 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 TSPAN16Q9UKR8 245 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 USP18Q9UMW8 372 aa11.11□□□□□ -0.63
DDX56-212ENST00000485367 CCDC163A0A0D9SF12 145 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 FAM187AA6NFU0 413 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 AXIN1O15169 862 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 GREM1O60565 184 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 APBB3O95704 486 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 AGTP01019 485 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 AFPP02771 609 aaKnown RBP11.1□□□□□ -0.63
DDX56-212ENST00000485367 VDRP11473 427 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 CCND1P24385 295 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 EIF2DP41214 584 aaKnown RBP11.1□□□□□ -0.63
DDX56-212ENST00000485367 PRKCIP41743 596 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 GRIA2P42262 883 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 BCAT1P54687 386 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 DRG2P55039 364 aaKnown RBP11.1□□□□□ -0.63
DDX56-212ENST00000485367 DHX9Q08211 1270 aaKnown RBP11.1□□□□□ -0.63
DDX56-212ENST00000485367 SPEM2Q0P670 501 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 EFEMP1Q12805 493 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 KCNH2Q12809 1159 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 NAA25Q14CX7 972 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 E2F5Q15329 346 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 VPS36Q86VN1 386 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 ARHGAP18Q8N392 663 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 FAM160A2Q8N612 972 aaPredicted RBP11.1□□□□□ -0.63
DDX56-212ENST00000485367 TSTD1Q8NFU3 115 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 OR2W6PQ8NHA6 318 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 GAB3Q8WWW8 586 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 NDRG1Q92597 394 aaKnown RBP11.1□□□□□ -0.63
DDX56-212ENST00000485367 KAT5Q92993 513 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 CDK5RAP1Q96SZ6 601 aaKnown RBP11.1□□□□□ -0.63
DDX56-212ENST00000485367 FMO2Q99518 471 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.1□□□□□ -0.63
DDX56-212ENST00000485367 LRRC4Q9HBW1 653 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 DEC1Q9P2X7 70 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 RASAL2Q9UJF2 1139 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 KIAA1257Q9ULG3 409 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.1□□□□□ -0.63
DDX56-212ENST00000485367 EML5Q05BV3 1969 aa11.1□□□□□ -0.63
DDX56-212ENST00000485367 MYO18AQ92614 2054 aaKnown RBP11.1□□□□□ -0.63
DDX56-212ENST00000485367 TBC1D3BA6NDS4 549 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 O00370 1275 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 XPO1O14980 1071 aaKnown RBP11.09□□□□□ -0.63
DDX56-212ENST00000485367 P4HA2O15460 535 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 HOXC11O43248 304 aaPredicted RBP11.09□□□□□ -0.63
DDX56-212ENST00000485367 TULP3O75386 442 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 LUC7L3O95232 432 aaKnown RBP11.09□□□□□ -0.63
DDX56-212ENST00000485367 ZBED1O96006 694 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 RETP07949 1114 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 HMBSP08397 361 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 TIE1P35590 1138 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 YWHAGP61981 247 aaKnown RBP eCLIP11.09□□□□□ -0.63
DDX56-212ENST00000485367 MRPS21P82921 87 aaKnown RBP11.09□□□□□ -0.63
DDX56-212ENST00000485367 BST2Q10589 180 aaKnown RBP11.09□□□□□ -0.63
DDX56-212ENST00000485367 RAPGEF1Q13905 1077 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 RAB41Q5JT25 222 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 C6orf118Q5T5N4 469 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 TPGS1Q6ZTW0 290 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 TRPM8Q7Z2W7 1104 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 ARHGEF19Q8IW93 802 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 ZNF276Q8N554 614 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 ALLCQ8N6M5 410 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 TPCN2Q8NHX9 752 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 LMO3Q8TAP4 145 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 TFAP2BQ92481 460 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 SPAG5Q96R06 1193 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 BBS2Q9BXC9 721 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 ULBP1Q9BZM6 244 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 NEUROG2Q9H2A3 272 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 GANQ9H2C0 597 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 PARD6AQ9NPB6 346 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.09□□□□□ -0.63
DDX56-212ENST00000485367 ADAMTS1Q9UHI8 967 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 BAIAP2L1Q9UHR4 511 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 DMXL1Q9Y485 3027 aa11.09□□□□□ -0.63
DDX56-212ENST00000485367 NEDD8-MDP1E9PL57 170 aa11.08□□□□□ -0.64
DDX56-212ENST00000485367 DAPK3O43293 454 aa11.08□□□□□ -0.64
DDX56-212ENST00000485367 STC2O76061 302 aa11.08□□□□□ -0.64
DDX56-212ENST00000485367 KLF8O95600 359 aaPredicted RBP11.08□□□□□ -0.64
DDX56-212ENST00000485367 CALCAP01258 141 aa11.08□□□□□ -0.64
DDX56-212ENST00000485367 MMEP08473 750 aa11.08□□□□□ -0.64
DDX56-212ENST00000485367 TNFRSF4P43489 277 aa11.08□□□□□ -0.64
DDX56-212ENST00000485367 CCNG1P51959 295 aa11.08□□□□□ -0.64
DDX56-212ENST00000485367 DGKEP52429 567 aa11.08□□□□□ -0.64
DDX56-212ENST00000485367 ADIGQ0VDE8 80 aa11.08□□□□□ -0.64
DDX56-212ENST00000485367 DHX34Q14147 1143 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms