RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TFECO14948 347 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 PSME3P61289 254 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 ERVK-24P63145 666 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF549Q6P9A3 640 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF496Q96IT1 587 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 TMEM117Q9H0C3 514 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 CCDC88AQ3V6T2 1871 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 KHDRBS3O75525 346 aaKnown RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 CHRNGP07510 517 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 CNPP09543 421 aaKnown RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 DENND2DQ9H6A0 471 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 PLOD2O00469 737 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 SRP54P61011 504 aaKnown RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 PSMC5P62195 406 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 CCDC189A1A4V9 331 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 METTL18O95568 372 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 RNF220Q5VTB9 566 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 ACAD10Q6JQN1 1059 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 SDR42E1Q8WUS8 393 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 FAM129BQ96TA1 746 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 RNF38Q9H0F5 515 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 RPS7P62081 194 aaKnown RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 RPS8P62241 208 aaKnown RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 PTPRNQ16849 979 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 RC3H1Q5TC82 1133 aaKnown RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 TMEM109Q9BVC6 243 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 ROGDIQ9GZN7 287 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 C2orf81A6NN90 581 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 HACD1B0YJ81 288 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 DGCR6Q14129 220 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 TMEM44Q2T9K0 475 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 PYHIN1Q6K0P9 492 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF767PQ75MW2 155 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 SRFBP1Q8NEF9 429 aaKnown RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 C18orf25Q96B23 403 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 ATXN7L3BQ96GX2 97 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 GUCA1AP43080 201 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 GLRA4Q5JXX5 417 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF594Q96JF6 807 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 IKZF3Q9UKT9 509 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF451Q9Y4E5 1061 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 BNIP1Q12981 228 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 NRF1Q16656 503 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 CPXCR1Q8N123 301 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 C7orf31Q8N865 590 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 FNDC8Q8TC99 324 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 CABLES1Q8TDN4 633 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 IRF2BPLQ9H1B7 796 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 PIGBOS1A0A0B4J2F0 54 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 CST8O60676 142 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 ERFP50548 548 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 SLC16A1P53985 500 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 MAB21L1Q13394 359 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF746Q6NUN9 644 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 FAM71DQ8N9W8 422 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 IPCEF1Q8WWN9 437 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 TSEN34Q9BSV6 310 aaKnown RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 HMBSP08397 361 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 CCNYL2Q5T2Q4 361 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 PDE2AO00408 941 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 SLC18A1P54219 525 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 SNRNP35Q16560 246 aaKnown RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 FBXL16Q8N461 479 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 OR52L1Q8NGH7 329 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 WWOXQ9NZC7 414 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 PCSK1NQ9UHG2 260 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 SNRPB2P08579 225 aaKnown RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 PRKAR2AP13861 404 aaKnown RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 KIZQ2M2Z5 673 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 C1orf189Q5VU69 101 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 KCNV1Q6PIU1 500 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 ASCC1Q8N9N2 400 aaKnown RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 MTMR12Q9C0I1 747 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 CXorf21Q9HAI6 301 aa12.81□□□□□ -0.36
COL6A3-203ENST00000353578 SARS2Q9NP81 518 aaKnown RBP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.81□□□□□ -0.36
COL6A3-203ENST00000353578 CITO14578 2027 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 TAF5Q15542 800 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 PPP1R15BQ5SWA1 713 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 N4BP2L1Q5TBK1 243 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-203ENST00000353578 CLNKQ7Z7G1 428 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 SNX32Q86XE0 403 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 MAGEE2Q8TD90 523 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-203ENST00000353578 KLHL1Q9NR64 748 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 NEXMIFQ5QGS0 1516 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 SH3D21A4FU49 640 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 TDGQ13569 410 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 MAB21L2Q9Y586 359 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 DCXO43602 365 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 KIAA1841Q6NSI8 718 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 LRRC47Q8N1G4 583 aaKnown RBP12.8□□□□□ -0.36
COL6A3-203ENST00000353578 DPF2Q92785 391 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 NSMCE3Q96MG7 304 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 PIGSQ96S52 555 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 CD93Q9NPY3 652 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 CAPN6Q9Y6Q1 641 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 ZC3H13Q5T200 1668 aaKnown RBP12.8□□□□□ -0.36
COL6A3-203ENST00000353578 CLPXO76031 633 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 TGM6O95932 706 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 TOP3BO95985 862 aaKnown RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms