RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 KDELR1P24390 212 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 PEX2P28328 305 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 BEX3Q00994 111 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 EEF1DP3Q658K8 133 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 FKBP9P1Q75LS8 142 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 EBF3Q9H4W6 596 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 PLGRKTQ9HBL7 147 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 CROTQ9UKG9 612 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 ZNF831Q5JPB2 1677 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 SLCO1B7G3V0H7 640 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 KCNK1O00180 336 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 MRASO14807 208 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 ATP6V1B2P21281 511 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 ADSSP30520 456 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 CACNB2Q08289 660 aaPredicted RBP15.67■□□□□ 0.1
SHH-201ENST00000297261 MMRN1Q13201 1228 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 CSHL1Q14406 222 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 NAPEPLDQ6IQ20 393 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 ACOT1Q86TX2 421 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 SLC7A14Q8TBB6 771 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 APBB2Q92870 758 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 TSPAN17Q96FV3 270 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 BBS2Q9BXC9 721 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 NIFKQ9BYG3 293 aaKnown RBP15.67■□□□□ 0.1
SHH-201ENST00000297261 SNTG2Q9NY99 539 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 KIAA1551Q9HCM1 1747 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 CFAP99D6REC4 459 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 CYB561D2O14569 222 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 TPP1O14773 563 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 RGS5O15539 181 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 HOXD10P28358 340 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 RAB27AP51159 221 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 PLK1P53350 603 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 CHRNB3Q05901 458 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 DHRSXQ8N5I4 330 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.67■□□□□ 0.1
SHH-201ENST00000297261 PABPC5Q96DU9 382 aaKnown RBP15.67■□□□□ 0.1
SHH-201ENST00000297261 FAXDC2Q96IV6 333 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 TNIP3Q96KP6 325 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 SPON2Q9BUD6 331 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 POLR1BQ9H9Y6 1135 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 AJAP1Q9UKB5 411 aaPredicted RBP15.67■□□□□ 0.1
SHH-201ENST00000297261 KPNA4O00629 521 aaPredicted RBP15.66■□□□□ 0.1
SHH-201ENST00000297261 BAIAP3O94812 1187 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 CD4P01730 458 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 YBX3P16989 372 aaKnown RBP eCLIP15.66■□□□□ 0.1
SHH-201ENST00000297261 PTPN11Q06124 597 aaPredicted RBP15.66■□□□□ 0.1
SHH-201ENST00000297261 NFYCQ13952 458 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 TNS4Q8IZW8 715 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 ARL10Q8N8L6 244 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 FAM162AQ96A26 154 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 TUBGCP5Q96RT8 1024 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 LRFN2Q9ULH4 789 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 AP4E1Q9UPM8 1137 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 GOLGA4Q13439 2230 aaKnown RBP15.66■□□□□ 0.1
SHH-201ENST00000297261 FAM155BO75949 473 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 ERVK-10P10266 1014 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 CYP2F1P24903 491 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 FKBP1BP68106 108 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 FASTKQ14296 549 aaKnown RBP15.66■□□□□ 0.1
SHH-201ENST00000297261 OR9Q1Q8NGQ5 310 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 ATAD3AQ9NVI7 634 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 PNPOQ9NVS9 261 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 PRKAG3Q9UGI9 489 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 MFN2O95140 757 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 CDC16Q13042 620 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 ZNF618Q5T7W0 954 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 TMC7Q7Z402 723 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 UNC45BQ8IWX7 931 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 PLEKHG4BQ96PX9 1271 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 C17orf80Q9BSJ5 609 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 DGCR6LQ9BY27 220 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 MAF1Q9H063 256 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 CDT1Q9H211 546 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 SP110Q9HB58 689 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 OLA1Q9NTK5 396 aaKnown RBP15.66■□□□□ 0.1
SHH-201ENST00000297261 NSMCE4AQ9NXX6 385 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 COPG2Q9UBF2 871 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 MYH4Q9Y623 1939 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 SUPT3HB4E1H0 165 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 F8W8V4 182 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 TRMUO75648 421 aaKnown RBP15.66■□□□□ 0.1
SHH-201ENST00000297261 EPHA3P29320 983 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 ARL2P36404 184 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 GPR107Q5VW38 600 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 KCNT2Q6UVM3 1135 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 KIAA0319LQ8IZA0 1049 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 RMDN1Q96DB5 314 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 PIDD1Q9HB75 910 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 SIX2Q9NPC8 291 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 RNF19AQ9NV58 838 aa15.66■□□□□ 0.1
SHH-201ENST00000297261 UBQLN1Q9UMX0 589 aaKnown RBP15.66■□□□□ 0.1
SHH-201ENST00000297261 TRDMT1O14717 391 aaKnown RBP15.65■□□□□ 0.1
SHH-201ENST00000297261 DDHD2O94830 711 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 HMGCRP04035 888 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 CDH2P19022 906 aaPredicted RBP15.65■□□□□ 0.1
SHH-201ENST00000297261 MFSD10Q14728 455 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 SNX19Q92543 992 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 RCN3Q96D15 328 aa15.65■□□□□ 0.1
SHH-201ENST00000297261 MRPS26Q9BYN8 205 aaKnown RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms