RNA–Protein interactions for RNA: YMR118C

SHH3, Transcript of Putative mitochondrial inner membrane protein of unknown function, yeast

Gene SHH3, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHH3	YMR118C	PUF6	Q04373	656 aa	Known RBP	4.18	□□□□□ -1.74
SHH3	YMR118C	RLF2	Q12495	606 aa		4.18	□□□□□ -1.74
SHH3	YMR118C	YRF1-1	P0CX20	1796 aa		4.17	□□□□□ -1.74
SHH3	YMR118C	YRF1-5	P0CX21	1796 aa		4.17	□□□□□ -1.74
SHH3	YMR118C	YRF1-8	P0CX22	1796 aa		4.17	□□□□□ -1.74
SHH3	YMR118C	DAT1	P13483	248 aa	Known RBP	4.17	□□□□□ -1.74
SHH3	YMR118C	KNS1	P32350	737 aa	Predicted RBP	4.17	□□□□□ -1.74
SHH3	YMR118C	UBP15	P50101	1230 aa		4.17	□□□□□ -1.74
SHH3	YMR118C	ITC1	P53125	1264 aa		4.17	□□□□□ -1.74
SHH3	YMR118C	CTR9	P89105	1077 aa		4.17	□□□□□ -1.74
SHH3	YMR118C	ISR1	Q06098	443 aa	Known RBP	4.17	□□□□□ -1.74
SHH3	YMR118C	DIT1	P21623	536 aa		4.16	□□□□□ -1.74
SHH3	YMR118C	CSE4	P36012	229 aa		4.16	□□□□□ -1.74
SHH3	YMR118C	TYS1	P36421	394 aa	Known RBP	4.16	□□□□□ -1.74
SHH3	YMR118C	IPL1	P38991	367 aa		4.16	□□□□□ -1.74
SHH3	YMR118C	SSN3	P39073	555 aa		4.16	□□□□□ -1.74
SHH3	YMR118C	YPP1	P46951	817 aa		4.16	□□□□□ -1.74
SHH3	YMR118C	MSN5	P52918	1224 aa		4.16	□□□□□ -1.74
SHH3	YMR118C	PAP2	P53632	584 aa	Known RBP	4.16	□□□□□ -1.74
SHH3	YMR118C	KRE33	P53914	1056 aa	Known RBP	4.16	□□□□□ -1.74
SHH3	YMR118C	ADE12	P80210	433 aa	Known RBP	4.16	□□□□□ -1.74
SHH3	YMR118C	ECM16	Q04217	1267 aa	Known RBP	4.16	□□□□□ -1.74
SHH3	YMR118C	CAB1	Q04430	367 aa		4.16	□□□□□ -1.74
SHH3	YMR118C	COG8	Q04632	607 aa		4.16	□□□□□ -1.74
SHH3	YMR118C	WTM2	Q12206	467 aa		4.16	□□□□□ -1.74
SHH3	YMR118C	NOP58	Q12499	511 aa	Known RBP	4.16	□□□□□ -1.74
SHH3	YMR118C	AIM44	Q99299	758 aa		4.16	□□□□□ -1.74
SHH3	YMR118C	SRS2	P12954	1174 aa		4.15	□□□□□ -1.75
SHH3	YMR118C	ISF1	P32488	338 aa		4.15	□□□□□ -1.75
SHH3	YMR118C	SIS2	P36024	562 aa		4.15	□□□□□ -1.75
SHH3	YMR118C	EMP47	P43555	445 aa		4.15	□□□□□ -1.75
SHH3	YMR118C	TAP42	Q04372	366 aa		4.15	□□□□□ -1.75
SHH3	YMR118C	SYT1	Q06836	1226 aa		4.15	□□□□□ -1.75
SHH3	YMR118C	RTT109	Q07794	436 aa		4.15	□□□□□ -1.75
SHH3	YMR118C	PDI1	P17967	522 aa	Known RBP	4.14	□□□□□ -1.75
SHH3	YMR118C	UTR2	P32623	467 aa		4.14	□□□□□ -1.75
SHH3	YMR118C	SLA1	P32790	1244 aa		4.14	□□□□□ -1.75
SHH3	YMR118C	AHP1	P38013	176 aa	Known RBP	4.14	□□□□□ -1.75
SHH3	YMR118C	MRX12	P47084	519 aa		4.14	□□□□□ -1.75
SHH3	YMR118C	YMR187C	Q03236	431 aa		4.14	□□□□□ -1.75
SHH3	YMR118C	LCD1	Q04377	747 aa		4.14	□□□□□ -1.75
SHH3	YMR118C	URN1	Q06525	465 aa	Known RBP	4.14	□□□□□ -1.75
SHH3	YMR118C	GRX4	P32642	244 aa		4.13	□□□□□ -1.75
SHH3	YMR118C	TBS1	P38114	1094 aa		4.13	□□□□□ -1.75
SHH3	YMR118C	RPN1	P38764	993 aa	Known RBP	4.13	□□□□□ -1.75
SHH3	YMR118C	UTP7	P40055	554 aa	Known RBP	4.13	□□□□□ -1.75
SHH3	YMR118C	PIL1	P53252	339 aa	Known RBP	4.13	□□□□□ -1.75
SHH3	YMR118C	TY1A-DR3	Q12441	440 aa		4.13	□□□□□ -1.75
SHH3	YMR118C	RAD50	P12753	1312 aa		4.13	□□□□□ -1.75
SHH3	YMR118C	PSK1	P31374	1356 aa		4.13	□□□□□ -1.75
SHH3	YMR118C	SPT2	P06843	333 aa	Predicted RBP	4.12	□□□□□ -1.75
SHH3	YMR118C	GUA1	P38625	525 aa	Known RBP	4.12	□□□□□ -1.75
SHH3	YMR118C	ALA1	P40825	983 aa	Known RBP	4.12	□□□□□ -1.75
SHH3	YMR118C	SBE2	P42223	864 aa	Known RBP	4.12	□□□□□ -1.75
SHH3	YMR118C	RSC1	P53236	928 aa		4.12	□□□□□ -1.75
SHH3	YMR118C	ESC2	Q06340	456 aa		4.12	□□□□□ -1.75
SHH3	YMR118C	HIM1	Q06674	414 aa		4.12	□□□□□ -1.75
SHH3	YMR118C	MCM16	Q12262	181 aa		4.12	□□□□□ -1.75
SHH3	YMR118C	YDR461C-A	Q2V2P7	80 aa		4.12	□□□□□ -1.75
SHH3	YMR118C	NUP145	P49687	1317 aa		4.12	□□□□□ -1.75
SHH3	YMR118C	AUS1	Q08409	1394 aa		4.12	□□□□□ -1.75
SHH3	YMR118C	YBL036C	P38197	257 aa		4.11	□□□□□ -1.75
SHH3	YMR118C	RKM3	P38222	552 aa		4.11	□□□□□ -1.75
SHH3	YMR118C	APL6	P46682	809 aa		4.11	□□□□□ -1.75
SHH3	YMR118C	RCM1	P53972	490 aa		4.11	□□□□□ -1.75
SHH3	YMR118C	NKP2	Q06162	153 aa		4.11	□□□□□ -1.75
SHH3	YMR118C	TDA6	Q06466	467 aa		4.11	□□□□□ -1.75
SHH3	YMR118C	ROM2	P51862	1356 aa	Known RBP	4.11	□□□□□ -1.75
SHH3	YMR118C	LEU2	P04173	364 aa	Predicted RBP	4.1	□□□□□ -1.75
SHH3	YMR118C	YDJ1	P25491	409 aa	Known RBP	4.1	□□□□□ -1.75
SHH3	YMR118C	SPT5	P27692	1063 aa	Known RBP	4.1	□□□□□ -1.75
SHH3	YMR118C	NMD2	P38798	1089 aa	Known RBP	4.1	□□□□□ -1.75
SHH3	YMR118C	HAL5	P38970	855 aa	Known RBP	4.1	□□□□□ -1.75
SHH3	YMR118C	RRT14	P40470	206 aa		4.1	□□□□□ -1.75
SHH3	YMR118C	HST1	P53685	503 aa		4.1	□□□□□ -1.75
SHH3	YMR118C	YNR014W	P53719	212 aa		4.1	□□□□□ -1.75
SHH3	YMR118C	SEC7	P11075	2009 aa	Known RBP	4.1	□□□□□ -1.75
SHH3	YMR118C	RPO41	P13433	1351 aa	Known RBP	4.1	□□□□□ -1.75
SHH3	YMR118C	PPH3	P32345	308 aa		4.09	□□□□□ -1.75
SHH3	YMR118C	RPN12	P32496	274 aa		4.09	□□□□□ -1.75
SHH3	YMR118C	RFC1	P38630	861 aa	Known RBP	4.09	□□□□□ -1.75
SHH3	YMR118C	YNG2	P38806	282 aa	Known RBP	4.09	□□□□□ -1.75
SHH3	YMR118C	BDH2	P39713	417 aa		4.09	□□□□□ -1.75
SHH3	YMR118C	TPM2	P40414	161 aa		4.09	□□□□□ -1.75
SHH3	YMR118C	SUM1	P46676	1062 aa		4.09	□□□□□ -1.75
SHH3	YMR118C	NPA3	P47122	385 aa		4.09	□□□□□ -1.75
SHH3	YMR118C	GYP7	P48365	746 aa		4.09	□□□□□ -1.75
SHH3	YMR118C	YGR130C	P53278	816 aa		4.09	□□□□□ -1.75
SHH3	YMR118C	SPO1	P53541	631 aa		4.09	□□□□□ -1.75
SHH3	YMR118C	MDG1	P53885	366 aa		4.09	□□□□□ -1.75
SHH3	YMR118C	DNF3	Q12674	1656 aa		4.09	□□□□□ -1.76
SHH3	YMR118C	RNR2	P09938	399 aa	Known RBP	4.08	□□□□□ -1.76
SHH3	YMR118C	BIK1	P11709	440 aa		4.08	□□□□□ -1.76
SHH3	YMR118C	FPS1	P23900	669 aa		4.08	□□□□□ -1.76
SHH3	YMR118C	MCM2	P29469	868 aa		4.08	□□□□□ -1.76
SHH3	YMR118C	MIC60	P36112	540 aa		4.08	□□□□□ -1.76
SHH3	YMR118C	BRN1	P38170	754 aa		4.08	□□□□□ -1.76
SHH3	YMR118C	SOH1	P38633	127 aa		4.08	□□□□□ -1.76
SHH3	YMR118C	RVS167	P39743	482 aa	Known RBP	4.08	□□□□□ -1.76
SHH3	YMR118C	RSM25	P40496	264 aa		4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 7.7 ms