RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeastyeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB5YLR260W SPT5P27692 1063 aaKnown RBP4.43□□□□□ -1.7
LCB5YLR260W EBP2P36049 427 aaKnown RBP4.43□□□□□ -1.7
LCB5YLR260W PAC1P39946 494 aaKnown RBP4.43□□□□□ -1.7
LCB5YLR260W SSB2P40150 613 aaKnown RBP4.43□□□□□ -1.7
LCB5YLR260W TY4A-JP47023 414 aa4.43□□□□□ -1.7
LCB5YLR260W POL32P47110 350 aa4.43□□□□□ -1.7
LCB5YLR260W INP54Q08227 384 aaKnown RBP4.43□□□□□ -1.7
LCB5YLR260W MSC6Q08818 692 aaKnown RBP4.43□□□□□ -1.7
LCB5YLR260W HIF1Q12373 385 aa4.43□□□□□ -1.7
LCB5YLR260W YBL113CQ7M4S9 792 aa4.43□□□□□ -1.7
LCB5YLR260W SEC3P33332 1336 aaKnown RBP4.43□□□□□ -1.7
LCB5YLR260W SUP45P12385 437 aaKnown RBP4.42□□□□□ -1.7
LCB5YLR260W YDJ1P25491 409 aaKnown RBP4.42□□□□□ -1.7
LCB5YLR260W TAP42Q04372 366 aa4.42□□□□□ -1.7
LCB5YLR260W CIT2P08679 460 aa4.42□□□□□ -1.7
LCB5YLR260W RRN7P40992 514 aa4.42□□□□□ -1.7
LCB5YLR260W ALG12P53730 551 aa4.42□□□□□ -1.7
LCB5YLR260W JIP5Q06214 492 aaPredicted RBP4.42□□□□□ -1.7
LCB5YLR260W UTP10P42945 1769 aaKnown RBP4.41□□□□□ -1.7
LCB5YLR260W OSM1P21375 501 aaKnown RBP4.41□□□□□ -1.7
LCB5YLR260W RPA14P50106 137 aa4.41□□□□□ -1.7
LCB5YLR260W YDL121CQ07541 149 aa4.41□□□□□ -1.7
LCB5YLR260W MHP1P43638 1398 aa4.41□□□□□ -1.7
LCB5YLR260W ENO2P00925 437 aaKnown RBP4.41□□□□□ -1.7
LCB5YLR260W SRP40P32583 406 aaPredicted RBP4.41□□□□□ -1.7
LCB5YLR260W ERP5P38819 212 aa4.41□□□□□ -1.7
LCB5YLR260W NAF1P53919 492 aaKnown RBP4.41□□□□□ -1.7
LCB5YLR260W MEC3Q02574 474 aa4.41□□□□□ -1.7
LCB5YLR260W OYE2Q03558 400 aaKnown RBP4.41□□□□□ -1.7
LCB5YLR260W PDS5Q04264 1277 aa4.41□□□□□ -1.7
LCB5YLR260W PDC1P06169 563 aaKnown RBP4.4□□□□□ -1.71
LCB5YLR260W TRK1P12685 1235 aa4.4□□□□□ -1.71
LCB5YLR260W SEC8P32855 1065 aa4.4□□□□□ -1.71
LCB5YLR260W EAF6P47128 113 aa4.4□□□□□ -1.71
LCB5YLR260W YPR097WQ06839 1073 aa4.4□□□□□ -1.71
LCB5YLR260W NUP145P49687 1317 aa4.4□□□□□ -1.71
LCB5YLR260W GRX4P32642 244 aa4.39□□□□□ -1.71
LCB5YLR260W MPE1P35728 441 aaKnown RBP4.39□□□□□ -1.71
LCB5YLR260W IOC3P43596 787 aa4.39□□□□□ -1.71
LCB5YLR260W ALR1Q08269 859 aa4.39□□□□□ -1.71
LCB5YLR260W STB3Q12427 513 aa4.39□□□□□ -1.71
LCB5YLR260W PAT1P25644 796 aaKnown RBP4.39□□□□□ -1.71
LCB5YLR260W TOS1P38288 455 aa4.39□□□□□ -1.71
LCB5YLR260W RPT2P40327 437 aaKnown RBP4.39□□□□□ -1.71
LCB5YLR260W RIM21P48565 533 aa4.39□□□□□ -1.71
LCB5YLR260W CWC22P53333 577 aaKnown RBP4.39□□□□□ -1.71
LCB5YLR260W ECM16Q04217 1267 aaKnown RBP4.39□□□□□ -1.71
LCB5YLR260W ATG13Q06628 738 aa4.39□□□□□ -1.71
LCB5YLR260W GYP1Q08484 637 aa4.39□□□□□ -1.71
LCB5YLR260W VMA4P22203 233 aaKnown RBP4.38□□□□□ -1.71
LCB5YLR260W SPT16P32558 1035 aaKnown RBP4.38□□□□□ -1.71
LCB5YLR260W YKL091CP33324 310 aaKnown RBP4.38□□□□□ -1.71
LCB5YLR260W YHL050CP38721 697 aa4.38□□□□□ -1.71
LCB5YLR260W YHR219WP38900 624 aa4.38□□□□□ -1.71
LCB5YLR260W ERP2P39704 215 aa4.38□□□□□ -1.71
LCB5YLR260W VAC8P39968 578 aa4.38□□□□□ -1.71
LCB5YLR260W BOI2P39969 1040 aa4.38□□□□□ -1.71
LCB5YLR260W DSD1P53095 428 aa4.38□□□□□ -1.71
LCB5YLR260W GIR2Q03768 265 aaPredicted RBP4.38□□□□□ -1.71
LCB5YLR260W SAS4Q04003 481 aa4.38□□□□□ -1.71
LCB5YLR260W WHI5Q12416 295 aa4.38□□□□□ -1.71
LCB5YLR260W YEL077CQ3E7X8 1277 aa4.38□□□□□ -1.71
LCB5YLR260W ENO1P00924 437 aaKnown RBP4.37□□□□□ -1.71
LCB5YLR260W RAD2P07276 1031 aa4.37□□□□□ -1.71
LCB5YLR260W TGL4P36165 910 aa4.37□□□□□ -1.71
LCB5YLR260W KXD1P53158 218 aa4.37□□□□□ -1.71
LCB5YLR260W ALD3P54114 506 aa4.37□□□□□ -1.71
LCB5YLR260W MRX10Q05648 414 aa4.37□□□□□ -1.71
LCB5YLR260W RIX7Q07844 837 aaKnown RBP4.37□□□□□ -1.71
LCB5YLR260W MCM16Q12262 181 aa4.37□□□□□ -1.71
LCB5YLR260W PMD1P32634 1753 aa4.37□□□□□ -1.71
LCB5YLR260W RAD4P14736 754 aa4.37□□□□□ -1.71
LCB5YLR260W HXT10P43581 546 aa4.37□□□□□ -1.71
LCB5YLR260W POB3Q04636 552 aaKnown RBP4.37□□□□□ -1.71
LCB5YLR260W SPT7P35177 1332 aa4.36□□□□□ -1.71
LCB5YLR260W MOD5P07884 428 aa4.36□□□□□ -1.71
LCB5YLR260W KAR2P16474 682 aaKnown RBP4.36□□□□□ -1.71
LCB5YLR260W TPD3P31383 635 aa4.36□□□□□ -1.71
LCB5YLR260W HSP104P31539 908 aaKnown RBP4.36□□□□□ -1.71
LCB5YLR260W VRP1P37370 817 aa4.36□□□□□ -1.71
LCB5YLR260W UBP3Q01477 912 aaKnown RBP RIP-Chip data4.36□□□□□ -1.71not detected
LCB5YLR260W BUG1Q12191 341 aa4.36□□□□□ -1.71
LCB5YLR260W TRL1P09880 827 aaKnown RBP4.36□□□□□ -1.71
LCB5YLR260W KAR1P11927 433 aa4.36□□□□□ -1.71
LCB5YLR260W SDH2P21801 266 aa4.36□□□□□ -1.71
LCB5YLR260W GRX1P25373 110 aaKnown RBP4.36□□□□□ -1.71
LCB5YLR260W NOP2P40991 618 aaKnown RBP4.36□□□□□ -1.71
LCB5YLR260W FIG4P42837 879 aa4.36□□□□□ -1.71
LCB5YLR260W YPP1P46951 817 aa4.36□□□□□ -1.71
LCB5YLR260W RRP46P53256 223 aaPredicted RBP4.36□□□□□ -1.71
LCB5YLR260W DNM1P54861 757 aa4.36□□□□□ -1.71
LCB5YLR260W KIN4Q01919 800 aa4.36□□□□□ -1.71
LCB5YLR260W TMA64Q04600 565 aaKnown RBP4.36□□□□□ -1.71
LCB5YLR260W TEC1P18412 486 aa4.35□□□□□ -1.71
LCB5YLR260W SSD1P24276 1250 aaKnown RBP RIP-Chip data4.35□□□□□ -1.71not detected
LCB5YLR260W ISF1P32488 338 aa4.35□□□□□ -1.71
LCB5YLR260W CAB3P36076 571 aa4.35□□□□□ -1.71
LCB5YLR260W AKL1P38080 1108 aaKnown RBP4.35□□□□□ -1.71
LCB5YLR260W POL5P39985 1022 aaKnown RBP4.35□□□□□ -1.71
LCB5YLR260W YBP2P53169 641 aa4.35□□□□□ -1.71
Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms