RNA–Protein interactions for RNA: YJL029C

VPS53, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS53, Length 2,469 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS53YJL029C PRE3P38624 215 aa4.33□□□□□ -1.72
VPS53YJL029C GLO3P38682 493 aaKnown RBP4.33□□□□□ -1.72
VPS53YJL029C MSH4P40965 878 aaPredicted RBP4.33□□□□□ -1.72
VPS53YJL029C YGR122WP53272 402 aa4.33□□□□□ -1.72
VPS53YJL029C GAP1P19145 602 aaPredicted RBP4.32□□□□□ -1.72
VPS53YJL029C NIT1P40447 199 aa4.32□□□□□ -1.72
VPS53YJL029C NOP2P40991 618 aaKnown RBP4.32□□□□□ -1.72
VPS53YJL029C APL6P46682 809 aa4.32□□□□□ -1.72
VPS53YJL029C VPS4P52917 437 aa4.32□□□□□ -1.72
VPS53YJL029C MTC3P53077 123 aa4.32□□□□□ -1.72
VPS53YJL029C SEN54Q02825 467 aaPredicted RBP4.32□□□□□ -1.72
VPS53YJL029C CBP1P07252 654 aa4.32□□□□□ -1.72
VPS53YJL029C SEC18P18759 758 aaKnown RBP4.32□□□□□ -1.72
VPS53YJL029C SWC3P31376 625 aa4.32□□□□□ -1.72
VPS53YJL029C STV1P37296 890 aa4.32□□□□□ -1.72
VPS53YJL029C PCS60P38137 543 aaKnown RBP RIP-Chip data4.32□□□□□ -1.72not detected
VPS53YJL029C YNG2P38806 282 aaKnown RBP4.32□□□□□ -1.72
VPS53YJL029C NCB2Q92317 146 aa4.32□□□□□ -1.72
VPS53YJL029C SNF3P10870 884 aa4.31□□□□□ -1.72
VPS53YJL029C MOT2P34909 587 aaKnown RBP4.31□□□□□ -1.72
VPS53YJL029C VPS70P47161 811 aa4.31□□□□□ -1.72
VPS53YJL029C PUS6P53294 404 aa4.31□□□□□ -1.72
VPS53YJL029C PCL8Q08966 492 aa4.31□□□□□ -1.72
VPS53YJL029C PRS1P32895 427 aaKnown RBP4.31□□□□□ -1.72
VPS53YJL029C DAN4P47179 1161 aa4.31□□□□□ -1.72
VPS53YJL029C RPS7AP26786 190 aaKnown RBP4.3□□□□□ -1.72
VPS53YJL029C DSF2P38213 736 aa4.3□□□□□ -1.72
VPS53YJL029C HXT10P43581 546 aa4.3□□□□□ -1.72
VPS53YJL029C NCS6P53088 359 aa4.3□□□□□ -1.72
VPS53YJL029C RBA50Q04418 439 aa4.3□□□□□ -1.72
VPS53YJL029C TOS4Q06266 489 aa4.3□□□□□ -1.72
VPS53YJL029C FLO1P32768 1537 aa4.3□□□□□ -1.72
VPS53YJL029C MAK11P20484 414 aaKnown RBP4.3□□□□□ -1.72
VPS53YJL029C APE3P37302 537 aaKnown RBP4.3□□□□□ -1.72
VPS53YJL029C OSH3P38713 996 aaKnown RBP4.3□□□□□ -1.72
VPS53YJL029C HAL5P38970 855 aaKnown RBP4.3□□□□□ -1.72
VPS53YJL029C PES4P39684 611 aa4.3□□□□□ -1.72
VPS53YJL029C GUT1P32190 709 aa4.29□□□□□ -1.72
VPS53YJL029C TPS3P38426 1054 aaKnown RBP4.29□□□□□ -1.72
VPS53YJL029C GSM1P42950 618 aa4.29□□□□□ -1.72
VPS53YJL029C MLC1P53141 149 aa4.29□□□□□ -1.72
VPS53YJL029C SNU71P53207 620 aaKnown RBP4.29□□□□□ -1.72
VPS53YJL029C PML39Q03760 334 aa4.29□□□□□ -1.72
VPS53YJL029C RRI2Q12348 645 aa4.29□□□□□ -1.72
VPS53YJL029C SPB4P25808 606 aaPredicted RBP4.29□□□□□ -1.72
VPS53YJL029C IOC3P43596 787 aa4.29□□□□□ -1.72
VPS53YJL029C YGL242CP53066 181 aa4.29□□□□□ -1.72
VPS53YJL029C ECM16Q04217 1267 aaKnown RBP4.29□□□□□ -1.72
VPS53YJL029C RAD53P22216 821 aa4.28□□□□□ -1.72
VPS53YJL029C PTK1P36002 662 aaPredicted RBP4.28□□□□□ -1.72
VPS53YJL029C BOI1P38041 980 aaKnown RBP4.28□□□□□ -1.72
VPS53YJL029C NET1P47035 1189 aa4.28□□□□□ -1.72
VPS53YJL029C SPO1P53541 631 aa4.28□□□□□ -1.72
VPS53YJL029C GIN4Q12263 1142 aa4.28□□□□□ -1.72
VPS53YJL029C MPH3P0CE00 602 aa4.28□□□□□ -1.72
VPS53YJL029C PIP2P52960 996 aa4.28□□□□□ -1.72
VPS53YJL029C INM2Q05533 292 aa4.28□□□□□ -1.72
VPS53YJL029C PPM2Q08282 695 aa4.28□□□□□ -1.72
VPS53YJL029C KIN1P13185 1064 aa4.27□□□□□ -1.73
VPS53YJL029C YNL193WP53870 558 aa4.27□□□□□ -1.73
VPS53YJL029C PMA1P05030 918 aaKnown RBP4.27□□□□□ -1.73
VPS53YJL029C DIT2P21595 489 aa4.27□□□□□ -1.73
VPS53YJL029C ADP1P25371 1049 aa4.27□□□□□ -1.73
VPS53YJL029C PTC3P34221 468 aaKnown RBP4.27□□□□□ -1.73
VPS53YJL029C SPR3P41901 512 aa4.27□□□□□ -1.73
VPS53YJL029C POL32P47110 350 aa4.27□□□□□ -1.73
VPS53YJL029C ENP2P48234 707 aaKnown RBP4.27□□□□□ -1.73
VPS53YJL029C RLF2Q12495 606 aa4.27□□□□□ -1.73
VPS53YJL029C CDC16P09798 840 aa4.26□□□□□ -1.73
VPS53YJL029C OCT1P35999 772 aa4.26□□□□□ -1.73
VPS53YJL029C KEL1P38853 1164 aaKnown RBP4.26□□□□□ -1.73
VPS53YJL029C RPN7Q06103 429 aaKnown RBP4.26□□□□□ -1.73
VPS53YJL029C TY3A-GQ12173 290 aa4.26□□□□□ -1.73
VPS53YJL029C TY3A-IQ99219 290 aa4.26□□□□□ -1.73
VPS53YJL029C PER1P25625 357 aa4.26□□□□□ -1.73
VPS53YJL029C MDL2P33311 773 aa4.26□□□□□ -1.73
VPS53YJL029C VRP1P37370 817 aa4.26□□□□□ -1.73
VPS53YJL029C VAB2P40003 282 aa4.26□□□□□ -1.73
VPS53YJL029C LYS14P40971 790 aa4.26□□□□□ -1.73
VPS53YJL029C SUB2Q07478 446 aaKnown RBP4.26□□□□□ -1.73
VPS53YJL029C NOT3P06102 836 aaKnown RBP4.25□□□□□ -1.73
VPS53YJL029C OPI1P21957 404 aa4.25□□□□□ -1.73
VPS53YJL029C ECM21P38167 1117 aaKnown RBP4.25□□□□□ -1.73
VPS53YJL029C PUF6Q04373 656 aaKnown RBP4.25□□□□□ -1.73
VPS53YJL029C YLR225CQ05948 407 aaKnown RBP4.25□□□□□ -1.73
VPS53YJL029C PFK2P16862 959 aaKnown RBP RIP-Chip data4.24□□□□□ -1.73not detected
VPS53YJL029C COQ8P27697 501 aa4.24□□□□□ -1.73
VPS53YJL029C RPT3P33298 428 aaKnown RBP4.24□□□□□ -1.73
VPS53YJL029C PNT1P38969 423 aa4.24□□□□□ -1.73
VPS53YJL029C YIR042CP40586 236 aa4.24□□□□□ -1.73
VPS53YJL029C YAF9P53930 226 aa4.24□□□□□ -1.73
VPS53YJL029C KAR5Q04746 504 aa4.24□□□□□ -1.73
VPS53YJL029C BRE1Q07457 700 aaKnown RBP4.24□□□□□ -1.73
VPS53YJL029C PDR18P53756 1333 aa4.24□□□□□ -1.73
VPS53YJL029C ERG12P07277 443 aa4.24□□□□□ -1.73
VPS53YJL029C GRX7P38068 203 aa4.24□□□□□ -1.73
VPS53YJL029C KTR3P38130 404 aaPredicted RBP4.24□□□□□ -1.73
VPS53YJL029C CST26P38226 397 aa4.24□□□□□ -1.73
VPS53YJL029C ERG7P38604 731 aa4.24□□□□□ -1.73
VPS53YJL029C NMD2P38798 1089 aaKnown RBP4.24□□□□□ -1.73
Retrieved 100 of 5,963 RNA–protein pairs in 32.6 ms