RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 SAFB2Q14151 953 aaKnown RBP eCLIP23.36■■□□□ 1.33
LIG1-214ENST00000597146 PARD3Q8TEW0 1356 aa23.34■■□□□ 1.33
LIG1-214ENST00000597146 ANKARQ7Z5J8 1434 aa23.33■■□□□ 1.33
LIG1-214ENST00000597146 APBA3O96018 575 aa23.33■■□□□ 1.33
LIG1-214ENST00000597146 PHRF1Q9P1Y6 1649 aaKnown RBP23.33■■□□□ 1.32
LIG1-214ENST00000597146 SIRT1Q96EB6 747 aa23.32■■□□□ 1.32
LIG1-214ENST00000597146 FAM196AQ6ZSG2 479 aa23.3■■□□□ 1.32
LIG1-214ENST00000597146 PRAM1Q96QH2 718 aa23.3■■□□□ 1.32
LIG1-214ENST00000597146 SPATA31A1Q5TZJ5 1347 aa23.3■■□□□ 1.32
LIG1-214ENST00000597146 PRDM11Q9NQV5 511 aa23.28■■□□□ 1.32
LIG1-214ENST00000597146 PPP1R1BQ9UD71 204 aaPredicted RBP23.28■■□□□ 1.32
LIG1-214ENST00000597146 DLC1Q96QB1 1528 aa23.27■■□□□ 1.32
LIG1-214ENST00000597146 GPRASP1Q5JY77 1395 aa23.27■■□□□ 1.31
LIG1-214ENST00000597146 ACIN1Q9UKV3 1341 aaKnown RBP23.26■■□□□ 1.31
LIG1-214ENST00000597146 DHX57Q6P158 1386 aaKnown RBP23.26■■□□□ 1.31
LIG1-214ENST00000597146 NINLQ9Y2I6 1382 aa23.26■■□□□ 1.31
LIG1-214ENST00000597146 C14orf93Q9H972 538 aaKnown RBP23.25■■□□□ 1.31
LIG1-214ENST00000597146 PRR36Q9H6K5 1346 aa23.25■■□□□ 1.31
LIG1-214ENST00000597146 KIAA0232Q92628 1395 aa23.25■■□□□ 1.31
LIG1-214ENST00000597146 CFAP70Q5T0N1 1121 aa23.24■■□□□ 1.31
LIG1-214ENST00000597146 SPON1Q9HCB6 807 aa23.24■■□□□ 1.31
LIG1-214ENST00000597146 STRN4Q9NRL3 753 aa23.24■■□□□ 1.31
LIG1-214ENST00000597146 TULP4Q9NRJ4 1543 aa23.23■■□□□ 1.31
LIG1-214ENST00000597146 CHRNA2Q15822 529 aa23.23■■□□□ 1.31
LIG1-214ENST00000597146 NBPF8Q3BBV2 869 aa23.23■■□□□ 1.31
LIG1-214ENST00000597146 NBPF14Q5TI25 921 aa23.23■■□□□ 1.31
LIG1-214ENST00000597146 NRKQ7Z2Y5 1582 aa23.23■■□□□ 1.31
LIG1-214ENST00000597146 CASZ1Q86V15 1759 aa23.22■■□□□ 1.31
LIG1-214ENST00000597146 HIRIP3Q9BW71 556 aaPredicted RBP23.22■■□□□ 1.31
LIG1-214ENST00000597146 USP35Q9P2H5 1018 aa23.22■■□□□ 1.31
LIG1-214ENST00000597146 ITSN1Q15811 1721 aa23.2■■□□□ 1.3
LIG1-214ENST00000597146 DCAF8L1A6NGE4 600 aa23.2■■□□□ 1.3
LIG1-214ENST00000597146 KCNQ2O43526 872 aa23.2■■□□□ 1.3
LIG1-214ENST00000597146 PAK3O75914 559 aaPredicted RBP23.2■■□□□ 1.3
LIG1-214ENST00000597146 POGKQ9P215 609 aa23.2■■□□□ 1.3
LIG1-214ENST00000597146 UTRNP46939 3433 aa23.2■■□□□ 1.3
LIG1-214ENST00000597146 MYOM1P52179 1685 aa23.19■■□□□ 1.3
LIG1-214ENST00000597146 RGPD3A6NKT7 1758 aaPredicted RBP23.19■■□□□ 1.3
LIG1-214ENST00000597146 RGPD4Q7Z3J3 1758 aa23.19■■□□□ 1.3
LIG1-214ENST00000597146 PARP4Q9UKK3 1724 aaKnown RBP23.18■■□□□ 1.3
LIG1-214ENST00000597146 ADGRB1O14514 1584 aa23.18■■□□□ 1.3
LIG1-214ENST00000597146 SSH2Q76I76 1423 aa23.17■■□□□ 1.3
LIG1-214ENST00000597146 PDE3BQ13370 1112 aa23.17■■□□□ 1.3
LIG1-214ENST00000597146 SBF2Q86WG5 1849 aa23.17■■□□□ 1.3
LIG1-214ENST00000597146 MINK1Q8N4C8 1332 aaPredicted RBP23.16■■□□□ 1.3
LIG1-214ENST00000597146 LMO7Q8WWI1 1683 aa23.16■■□□□ 1.3
LIG1-214ENST00000597146 EIF3AQ14152 1382 aaKnown RBP23.15■■□□□ 1.3
LIG1-214ENST00000597146 PEAK1Q9H792 1746 aa23.14■■□□□ 1.3
LIG1-214ENST00000597146 ZC3H6P61129 1189 aaKnown RBP23.14■■□□□ 1.29
LIG1-214ENST00000597146 NGDNQ8NEJ9 315 aaKnown RBP23.14■■□□□ 1.29
LIG1-214ENST00000597146 BARGINQ6ZT62 677 aa23.13■■□□□ 1.29
LIG1-214ENST00000597146 ZNF784Q8NCA9 323 aaPredicted RBP23.13■■□□□ 1.29
LIG1-214ENST00000597146 CHD4Q14839 1912 aa23.12■■□□□ 1.29
LIG1-214ENST00000597146 ATP7BP35670 1465 aa23.11■■□□□ 1.29
LIG1-214ENST00000597146 NUTM2GQ5VZR2 741 aa23.11■■□□□ 1.29
LIG1-214ENST00000597146 LARP1Q6PKG0 1096 aaKnown RBP23.1■■□□□ 1.29
LIG1-214ENST00000597146 MPHOSPH9Q99550 1183 aa23.1■■□□□ 1.29
LIG1-214ENST00000597146 ANO8Q9HCE9 1232 aaPredicted RBP23.1■■□□□ 1.29
LIG1-214ENST00000597146 TRAK1Q9UPV9 953 aa23.1■■□□□ 1.29
LIG1-214ENST00000597146 LRRC37A3O60309 1634 aa23.09■■□□□ 1.29
LIG1-214ENST00000597146 SENP3-EIF4A1A0A087X0R7 540 aa23.09■■□□□ 1.29
LIG1-214ENST00000597146 WASLO00401 505 aaPredicted RBP23.08■■□□□ 1.29
LIG1-214ENST00000597146 EVA1CP58658 441 aa23.08■■□□□ 1.29
LIG1-214ENST00000597146 PDGFDQ9GZP0 370 aaPredicted RBP23.08■■□□□ 1.29
LIG1-214ENST00000597146 TOPAZ1Q8N9V7 1692 aa23.08■■□□□ 1.29
LIG1-214ENST00000597146 ARHGEF28Q8N1W1 1705 aaKnown RBP23.08■■□□□ 1.28
LIG1-214ENST00000597146 TCP11L2Q8N4U5 519 aa23.07■■□□□ 1.28
LIG1-214ENST00000597146 WNK3Q9BYP7 1800 aa23.05■■□□□ 1.28
LIG1-214ENST00000597146 OVOS2A0A0G2JMS6 1433 aa23.04■■□□□ 1.28
LIG1-214ENST00000597146 OVOS2A0A0J9YW53 1432 aa23.04■■□□□ 1.28
LIG1-214ENST00000597146 OVOS2Q6IE36 1432 aa23.04■■□□□ 1.28
LIG1-214ENST00000597146 ZBTB7AO95365 584 aa23.03■■□□□ 1.28
LIG1-214ENST00000597146 AKAP12Q02952 1782 aa23.01■■□□□ 1.27
LIG1-214ENST00000597146 COL5A2P05997 1499 aaPredicted RBP23.01■■□□□ 1.27
LIG1-214ENST00000597146 PTGER2P43116 358 aa22.99■■□□□ 1.27
LIG1-214ENST00000597146 PTF1AQ7RTS3 328 aa22.99■■□□□ 1.27
LIG1-214ENST00000597146 CPDO75976 1380 aa22.99■■□□□ 1.27
LIG1-214ENST00000597146 C1QTNF8P60827 252 aa22.98■■□□□ 1.27
LIG1-214ENST00000597146 NUDT16Q96DE0 195 aaKnown RBP22.98■■□□□ 1.27
LIG1-214ENST00000597146 IFFO2Q5TF58 517 aa22.97■■□□□ 1.27
LIG1-214ENST00000597146 ATF5Q9Y2D1 282 aaPredicted RBP22.97■■□□□ 1.27
LIG1-214ENST00000597146 THRAP3Q9Y2W1 955 aaKnown RBP22.97■■□□□ 1.27
LIG1-214ENST00000597146 PLSCR1O15162 318 aa22.96■■□□□ 1.27
LIG1-214ENST00000597146 POLR3AO14802 1390 aaPredicted RBP22.95■■□□□ 1.26
LIG1-214ENST00000597146 USP19O94966 1318 aa22.95■■□□□ 1.26
LIG1-214ENST00000597146 CRB1P82279 1406 aa22.95■■□□□ 1.26
LIG1-214ENST00000597146 FHDC1Q9C0D6 1143 aaPredicted RBP22.95■■□□□ 1.26
LIG1-214ENST00000597146 BCL11BQ9C0K0 894 aaPredicted RBP22.95■■□□□ 1.26
LIG1-214ENST00000597146 ACEP12821 1306 aa22.93■■□□□ 1.26
LIG1-214ENST00000597146 PROM2Q8N271 834 aa22.93■■□□□ 1.26
LIG1-214ENST00000597146 CEP350Q5VT06 3117 aa22.92■■□□□ 1.26
LIG1-214ENST00000597146 C11orf95C9JLR9 678 aaPredicted RBP22.92■■□□□ 1.26
LIG1-214ENST00000597146 ABTB2Q8N961 1025 aa22.92■■□□□ 1.26
LIG1-214ENST00000597146 SYT17Q9BSW7 474 aa22.92■■□□□ 1.26
LIG1-214ENST00000597146 ZBTB7CA1YPR0 619 aa22.88■■□□□ 1.25
LIG1-214ENST00000597146 DDB1Q16531 1140 aa22.88■■□□□ 1.25
LIG1-214ENST00000597146 CDK19Q9BWU1 502 aa22.88■■□□□ 1.25
LIG1-214ENST00000597146 COL18A1P39060 1754 aa22.88■■□□□ 1.25
LIG1-214ENST00000597146 RGPD5Q99666 1765 aa22.87■■□□□ 1.25
LIG1-214ENST00000597146 STK32BQ9NY57 414 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms