RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 DXOO77932 396 aaKnown RBP3.47□□□□□ -1.85
SMCHD1-211ENST00000584897 SLC10A3P09131 477 aa3.47□□□□□ -1.85
SMCHD1-211ENST00000584897 BPHLQ86WA6 291 aaPredicted RBP3.47□□□□□ -1.85
SMCHD1-211ENST00000584897 NPAS3Q8IXF0 933 aa3.47□□□□□ -1.85
SMCHD1-211ENST00000584897 ATAD2BQ9ULI0 1458 aa3.47□□□□□ -1.85
SMCHD1-211ENST00000584897 CLASP1Q7Z460 1538 aa3.47□□□□□ -1.85
SMCHD1-211ENST00000584897 WDR97A6NE52 1622 aa3.47□□□□□ -1.85
SMCHD1-211ENST00000584897 ZCCHC6Q5VYS8 1495 aaKnown RBP3.47□□□□□ -1.85
SMCHD1-211ENST00000584897 MPNDQ8N594 471 aa3.47□□□□□ -1.85
SMCHD1-211ENST00000584897 ZMYND10O75800 440 aa3.46□□□□□ -1.85
SMCHD1-211ENST00000584897 FBXO41Q8TF61 875 aa3.46□□□□□ -1.85
SMCHD1-211ENST00000584897 PRDM2Q13029 1718 aa3.46□□□□□ -1.85
SMCHD1-211ENST00000584897 C11orf95C9JLR9 678 aaPredicted RBP3.46□□□□□ -1.86
SMCHD1-211ENST00000584897 AMHR2Q16671 573 aa3.46□□□□□ -1.86
SMCHD1-211ENST00000584897 PCMTD1Q96MG8 357 aaPredicted RBP3.46□□□□□ -1.86
SMCHD1-211ENST00000584897 FAM217BQ9NTX9 383 aaPredicted RBP3.46□□□□□ -1.86
SMCHD1-211ENST00000584897 CHD1O14646 1710 aa3.46□□□□□ -1.86
SMCHD1-211ENST00000584897 HOXA2O43364 376 aa3.46□□□□□ -1.86
SMCHD1-211ENST00000584897 KCNH2Q12809 1159 aa3.46□□□□□ -1.86
SMCHD1-211ENST00000584897 CRIPAKQ8N1N5 446 aa3.46□□□□□ -1.86
SMCHD1-211ENST00000584897 TRIM32Q13049 653 aa3.46□□□□□ -1.86
SMCHD1-211ENST00000584897 FOXR1Q6PIV2 292 aa3.46□□□□□ -1.86
SMCHD1-211ENST00000584897 HECW2Q9P2P5 1572 aa3.46□□□□□ -1.86
SMCHD1-211ENST00000584897 NKX2-3Q8TAU0 364 aa3.45□□□□□ -1.86
SMCHD1-211ENST00000584897 LMTK3Q96Q04 1460 aa3.45□□□□□ -1.86
SMCHD1-211ENST00000584897 NR5A1Q13285 461 aa3.45□□□□□ -1.86
SMCHD1-211ENST00000584897 PUS10Q3MIT2 529 aaKnown RBP3.45□□□□□ -1.86
SMCHD1-211ENST00000584897 RC3H1Q5TC82 1133 aaKnown RBP3.45□□□□□ -1.86
SMCHD1-211ENST00000584897 RNF20Q5VTR2 975 aa3.45□□□□□ -1.86
SMCHD1-211ENST00000584897 STK17AQ9UEE5 414 aa3.45□□□□□ -1.86
SMCHD1-211ENST00000584897 PIK3R2O00459 728 aa3.44□□□□□ -1.86
SMCHD1-211ENST00000584897 AVPP01185 164 aa3.44□□□□□ -1.86
SMCHD1-211ENST00000584897 PTK2Q05397 1052 aa3.44□□□□□ -1.86
SMCHD1-211ENST00000584897 RNF225M0QZC1 329 aaPredicted RBP3.44□□□□□ -1.86
SMCHD1-211ENST00000584897 TMEM132AQ24JP5 1023 aa3.44□□□□□ -1.86
SMCHD1-211ENST00000584897 TMEM259Q4ZIN3 620 aa3.44□□□□□ -1.86
SMCHD1-211ENST00000584897 EMILIN1Q9Y6C2 1016 aa3.44□□□□□ -1.86
SMCHD1-211ENST00000584897 C3orf80F5H4A9 247 aa3.43□□□□□ -1.86
SMCHD1-211ENST00000584897 LIAT1Q6ZQX7 453 aa3.43□□□□□ -1.86
SMCHD1-211ENST00000584897 RIC3Q7Z5B4 369 aa3.43□□□□□ -1.86
SMCHD1-211ENST00000584897 PRR7Q8TB68 274 aa3.43□□□□□ -1.86
SMCHD1-211ENST00000584897 BEGAINQ9BUH8 593 aa3.43□□□□□ -1.86
SMCHD1-211ENST00000584897 NSFL1CQ9UNZ2 370 aaKnown RBP3.43□□□□□ -1.86
SMCHD1-211ENST00000584897 TLL1O43897 1013 aa3.43□□□□□ -1.86
SMCHD1-211ENST00000584897 GPSM3Q9Y4H4 160 aa3.43□□□□□ -1.86
SMCHD1-211ENST00000584897 SMARCA4P51532 1647 aa3.43□□□□□ -1.86
SMCHD1-211ENST00000584897 CAPN5O15484 640 aaPredicted RBP3.43□□□□□ -1.86
SMCHD1-211ENST00000584897 IRF7Q92985 503 aa3.43□□□□□ -1.86
SMCHD1-211ENST00000584897 GDF9O60383 454 aa3.42□□□□□ -1.86
SMCHD1-211ENST00000584897 ZBTB33Q86T24 672 aa3.42□□□□□ -1.86
SMCHD1-211ENST00000584897 ZC3H15Q8WU90 426 aaKnown RBP3.42□□□□□ -1.86
SMCHD1-211ENST00000584897 THAP11Q96EK4 314 aa3.42□□□□□ -1.86
SMCHD1-211ENST00000584897 EVA1BQ9NVM1 165 aa3.42□□□□□ -1.86
SMCHD1-211ENST00000584897 ALDH1A1P00352 501 aa3.42□□□□□ -1.86
SMCHD1-211ENST00000584897 TSC1Q92574 1164 aa3.42□□□□□ -1.86
SMCHD1-211ENST00000584897 WFS1O76024 890 aa3.42□□□□□ -1.86
SMCHD1-211ENST00000584897 ADH1CP00326 375 aa3.42□□□□□ -1.86
SMCHD1-211ENST00000584897 KDM6BO15054 1643 aa3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 TNFRSF10AO00220 468 aa3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 MYT1Q01538 1121 aa3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 GIGYF2Q6Y7W6 1299 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 SPIRE2Q8WWL2 714 aa3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 SLC10A4Q96EP9 437 aa3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 TBC1D2Q9BYX2 928 aa3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 LYPD8Q6UX82 237 aa3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 C14orf37Q86TY3 774 aa3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 SIRT1Q96EB6 747 aa3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 SPATA31D1Q6ZQQ2 1576 aa3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 CLK2P49760 499 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-211ENST00000584897 PPEF1O14829 653 aaPredicted RBP3.4□□□□□ -1.86
SMCHD1-211ENST00000584897 GMCL1Q96IK5 515 aa3.4□□□□□ -1.86
SMCHD1-211ENST00000584897 TSEN34Q9BSV6 310 aaKnown RBP3.4□□□□□ -1.86
SMCHD1-211ENST00000584897 FAM161AQ3B820 660 aa3.4□□□□□ -1.87
SMCHD1-211ENST00000584897 NBPF20Q3BBV1 942 aa3.4□□□□□ -1.87
SMCHD1-211ENST00000584897 FAM160A2Q8N612 972 aaPredicted RBP3.4□□□□□ -1.87
SMCHD1-211ENST00000584897 ENAMQ9NRM1 1142 aa3.4□□□□□ -1.87
SMCHD1-211ENST00000584897 TOR4AQ9NXH8 423 aa3.4□□□□□ -1.87
SMCHD1-211ENST00000584897 IFT140Q96RY7 1462 aa3.4□□□□□ -1.87
SMCHD1-211ENST00000584897 CEP164Q9UPV0 1460 aa3.4□□□□□ -1.87
SMCHD1-211ENST00000584897 SKIV2LQ15477 1246 aaKnown RBP3.4□□□□□ -1.87
SMCHD1-211ENST00000584897 EIF4G3O43432 1585 aaKnown RBP3.4□□□□□ -1.87
SMCHD1-211ENST00000584897 TRIM66O15016 1216 aa3.39□□□□□ -1.87
SMCHD1-211ENST00000584897 RSBN1LQ6PCB5 846 aaPredicted RBP3.39□□□□□ -1.87
SMCHD1-211ENST00000584897 TREML4Q6UXN2 200 aa3.39□□□□□ -1.87
SMCHD1-211ENST00000584897 DZIP3Q86Y13 1208 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-211ENST00000584897 PPP2R2DQ66LE6 453 aa3.39□□□□□ -1.87
SMCHD1-211ENST00000584897 PDXDC2PQ6P474 469 aa3.39□□□□□ -1.87
SMCHD1-211ENST00000584897 MAP4K5Q9Y4K4 846 aa3.39□□□□□ -1.87
SMCHD1-211ENST00000584897 MAN1A2O60476 641 aa3.39□□□□□ -1.87
SMCHD1-211ENST00000584897 ARHGAP9Q9BRR9 750 aa3.39□□□□□ -1.87
SMCHD1-211ENST00000584897 UNC93B1Q9H1C4 597 aa3.39□□□□□ -1.87
SMCHD1-211ENST00000584897 GTF3C3Q9Y5Q9 886 aa3.39□□□□□ -1.87
SMCHD1-211ENST00000584897 PDE4DQ08499 809 aa3.38□□□□□ -1.87
SMCHD1-211ENST00000584897 ARID5BQ14865 1188 aa3.38□□□□□ -1.87
SMCHD1-211ENST00000584897 VASH1Q7L8A9 365 aaPredicted RBP3.38□□□□□ -1.87
SMCHD1-211ENST00000584897 RNF19BQ6ZMZ0 732 aa3.38□□□□□ -1.87
SMCHD1-211ENST00000584897 TRIM47Q96LD4 638 aa3.38□□□□□ -1.87
SMCHD1-211ENST00000584897 ATP13A2Q9NQ11 1180 aa3.38□□□□□ -1.87
SMCHD1-211ENST00000584897 PHF24Q9UPV7 400 aa3.38□□□□□ -1.87
SMCHD1-211ENST00000584897 CADPSQ9ULU8 1353 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms