RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 USP17L17D6RBQ6 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 USP17L19D6RCP7 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 USP17L20D6RJB6 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 FBXO45P0C2W1 286 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 USP17L24Q0WX57 530 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 CRTC2Q53ET0 693 aaPredicted RBP3.26□□□□□ -1.89
CHD3-217ENST00000574022 ZNF326Q5BKZ1 582 aaKnown RBP3.26□□□□□ -1.89
CHD3-217ENST00000574022 DESI1Q6ICB0 168 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 LYPD8Q6UX82 237 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 RETREG3Q86VR2 466 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 DEPDC4Q8N2C3 294 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 CLP1Q92989 425 aaKnown RBP3.26□□□□□ -1.89
CHD3-217ENST00000574022 KCNH8Q96L42 1107 aa3.26□□□□□ -1.89
CHD3-217ENST00000574022 BIN2Q9UBW5 565 aaPredicted RBP3.26□□□□□ -1.89
CHD3-217ENST00000574022 ATP5J2-PTCD1G3V325 749 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 LZTS3O60299 673 aaPredicted RBP3.25□□□□□ -1.89
CHD3-217ENST00000574022 CFHP08603 1231 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 TCF3P15923 654 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 ATP2B4P23634 1241 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 FAM69CQ0P6D2 419 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 PTK7Q13308 1070 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 Q3C1V9 767 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 SLFNL1Q499Z3 407 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 NOM1Q5C9Z4 860 aaKnown RBP3.25□□□□□ -1.89
CHD3-217ENST00000574022 ANKMY2Q8IV38 441 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 FAM174AQ8TBP5 190 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 GIPC2Q8TF65 315 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 KCNK17Q96T54 332 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 SLAIN2Q9P270 581 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 CEP126Q9P2H0 1117 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 FKBPLQ9UIM3 349 aa3.25□□□□□ -1.89
CHD3-217ENST00000574022 ANKRD33BA6NCL7 494 aa3.24□□□□□ -1.89
CHD3-217ENST00000574022 CDK11BP21127 795 aaKnown RBP3.24□□□□□ -1.89
CHD3-217ENST00000574022 SERPINB4P48594 390 aa3.24□□□□□ -1.89
CHD3-217ENST00000574022 MCCD1P59942 119 aaPredicted RBP3.24□□□□□ -1.89
CHD3-217ENST00000574022 NCOA4Q13772 614 aa3.24□□□□□ -1.89
CHD3-217ENST00000574022 KMT5BQ4FZB7 885 aa3.24□□□□□ -1.89
CHD3-217ENST00000574022 ZNF592Q92610 1267 aa3.24□□□□□ -1.89
CHD3-217ENST00000574022 ZBED2Q9BTP6 218 aa3.24□□□□□ -1.89
CHD3-217ENST00000574022 SEPT9Q9UHD8 586 aaPredicted RBP3.24□□□□□ -1.89
CHD3-217ENST00000574022 RABGEF1Q9UJ41 708 aa3.24□□□□□ -1.89
CHD3-217ENST00000574022 CDK11AQ9UQ88 783 aaPredicted RBP3.24□□□□□ -1.89
CHD3-217ENST00000574022 ZC3H4Q9UPT8 1303 aaKnown RBP3.23□□□□□ -1.89
CHD3-217ENST00000574022 RNF40O75150 1001 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 PTK2Q05397 1052 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 DPYDQ12882 1025 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 SWI5Q1ZZU3 235 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 MAP7D1Q3KQU3 841 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 MORN1Q5T089 497 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 TRIM50Q86XT4 487 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 RNF135Q8IUD6 432 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 NPAS4Q8IUM7 802 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 OGFOD1Q8N543 542 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 PLPP7Q8NBV4 271 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 DRC1Q96MC2 740 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 SLC27A5Q9Y2P5 690 aa3.23□□□□□ -1.89
CHD3-217ENST00000574022 ABL1P00519 1130 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 CTHP32929 405 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 SCNN1AP37088 669 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 ATP1A2P50993 1020 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 FAM98CQ17RN3 349 aaKnown RBP3.22□□□□□ -1.89
CHD3-217ENST00000574022 EML3Q32P44 896 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 PUS10Q3MIT2 529 aaKnown RBP3.22□□□□□ -1.89
CHD3-217ENST00000574022 SAMD7Q7Z3H4 446 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 FAM177A1Q8N128 213 aaPredicted RBP3.22□□□□□ -1.89
CHD3-217ENST00000574022 PHTF2Q8N3S3 785 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 C1orf216Q8TAB5 229 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 ZNF594Q96JF6 807 aaPredicted RBP3.22□□□□□ -1.89
CHD3-217ENST00000574022 USB1Q9BQ65 265 aaKnown RBP3.22□□□□□ -1.89
CHD3-217ENST00000574022 BCL11AQ9H165 835 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 DNAAF2Q9NVR5 837 aaKnown RBP3.22□□□□□ -1.89
CHD3-217ENST00000574022 EGFL7Q9UHF1 273 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 NOD1Q9Y239 953 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 RBM19Q9Y4C8 960 aaKnown RBP3.22□□□□□ -1.89
CHD3-217ENST00000574022 GPSM3Q9Y4H4 160 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 PCDHB9Q9Y5E1 797 aa3.22□□□□□ -1.89
CHD3-217ENST00000574022 ACTN4O43707 911 aaKnown RBP3.21□□□□□ -1.9
CHD3-217ENST00000574022 PRMT3O60678 531 aa3.21□□□□□ -1.9
CHD3-217ENST00000574022 F12P00748 615 aaPredicted RBP3.21□□□□□ -1.9
CHD3-217ENST00000574022 POTEIP0CG38 1075 aa3.21□□□□□ -1.9
CHD3-217ENST00000574022 VAMP1P23763 118 aa3.21□□□□□ -1.9
CHD3-217ENST00000574022 PSEN2P49810 448 aa3.21□□□□□ -1.9
CHD3-217ENST00000574022 CLDN10P78369 228 aa3.21□□□□□ -1.9
CHD3-217ENST00000574022 KCNH2Q12809 1159 aa3.21□□□□□ -1.9
CHD3-217ENST00000574022 LARGE2Q8N3Y3 721 aa3.21□□□□□ -1.9
CHD3-217ENST00000574022 ARMC2Q8NEN0 867 aa3.21□□□□□ -1.9
CHD3-217ENST00000574022 SREK1Q8WXA9 508 aaKnown RBP3.21□□□□□ -1.9
CHD3-217ENST00000574022 C8orf37Q96NL8 207 aa3.21□□□□□ -1.9
CHD3-217ENST00000574022 MAP10Q9P2G4 905 aa3.21□□□□□ -1.9
CHD3-217ENST00000574022 H3BRB1 525 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 ZBTB7BO15156 539 aaPredicted RBP3.2□□□□□ -1.9
CHD3-217ENST00000574022 ICMTO60725 284 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 MAPK1P28482 360 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 SEC13P55735 322 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 ZC3H6P61129 1189 aaKnown RBP3.2□□□□□ -1.9
CHD3-217ENST00000574022 PTPRNQ16849 979 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 TSGA10IPQ3SY00 556 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 PDXDC2PQ6P474 469 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 BRICD5Q6PL45 260 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 TRAF7Q6Q0C0 670 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms