RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-217	ENST00000574022	CHIC1	Q5VXU3	224 aa		6.96	□□□□□ -1.3
CHD3-217	ENST00000574022	AEBP2	Q6ZN18	517 aa	Predicted RBP	6.79	□□□□□ -1.32
CHD3-217	ENST00000574022	PHF23	Q9BUL5	403 aa	Predicted RBP	6.16	□□□□□ -1.42
CHD3-217	ENST00000574022	PLPPR3	Q6T4P5	718 aa		5.82	□□□□□ -1.48
CHD3-217	ENST00000574022	SENP3	Q9H4L4	574 aa	Predicted RBP	5.71	□□□□□ -1.5
CHD3-217	ENST00000574022	EHMT2	Q96KQ7	1210 aa		5.5	□□□□□ -1.53
CHD3-217	ENST00000574022	ADRA2B	P18089	450 aa		5.43	□□□□□ -1.54
CHD3-217	ENST00000574022	KCNA4	P22459	653 aa		5.43	□□□□□ -1.54
CHD3-217	ENST00000574022	PPP6R1	Q9UPN7	881 aa		5.34	□□□□□ -1.55
CHD3-217	ENST00000574022	FOXD1	Q16676	465 aa		5.26	□□□□□ -1.57
CHD3-217	ENST00000574022	CSRNP3	Q8WYN3	585 aa		5.26	□□□□□ -1.57
CHD3-217	ENST00000574022	SLC4A1AP	Q9BWU0	796 aa	Known RBP	5.25	□□□□□ -1.57
CHD3-217	ENST00000574022	PPP4R3CP	Q6ZMV5	832 aa		5.18	□□□□□ -1.58
CHD3-217	ENST00000574022	NCBP3	Q53F19	620 aa	Known RBP	5.15	□□□□□ -1.59
CHD3-217	ENST00000574022	NPM3	O75607	178 aa	Known RBP	5.05	□□□□□ -1.6
CHD3-217	ENST00000574022	PIAS4	Q8N2W9	510 aa	Predicted RBP	5.05	□□□□□ -1.6
CHD3-217	ENST00000574022	SLC24A1	O60721	1099 aa		5	□□□□□ -1.61
CHD3-217	ENST00000574022	ZBTB22	O15209	634 aa		4.99	□□□□□ -1.61
CHD3-217	ENST00000574022	CNKSR2	Q8WXI2	1034 aa		4.95	□□□□□ -1.62
CHD3-217	ENST00000574022	AMER1	Q5JTC6	1135 aa	Predicted RBP	4.92	□□□□□ -1.62
CHD3-217	ENST00000574022	RTN4	Q9NQC3	1192 aa	Known RBP	4.92	□□□□□ -1.62
CHD3-217	ENST00000574022	SCAF1	Q9H7N4	1312 aa	Known RBP	4.92	□□□□□ -1.62
CHD3-217	ENST00000574022	FOXD4L1	Q9NU39	408 aa		4.9	□□□□□ -1.63
CHD3-217	ENST00000574022	DNAJC5B	Q9UF47	199 aa		4.84	□□□□□ -1.63
CHD3-217	ENST00000574022	MAPK8IP2	Q13387	824 aa	Predicted RBP	4.77	□□□□□ -1.65
CHD3-217	ENST00000574022	RNF216	Q9NWF9	866 aa	Predicted RBP	4.77	□□□□□ -1.65
CHD3-217	ENST00000574022	FKBP8	Q14318	412 aa		4.74	□□□□□ -1.65
CHD3-217	ENST00000574022	MSH5	O43196	834 aa		4.72	□□□□□ -1.65
CHD3-217	ENST00000574022	ATXN8OS	P0DMR3	200 aa		4.71	□□□□□ -1.66
CHD3-217	ENST00000574022	SLC4A2	P04920	1241 aa		4.69	□□□□□ -1.66
CHD3-217	ENST00000574022	MYCN	P04198	464 aa	Predicted RBP	4.66	□□□□□ -1.66
CHD3-217	ENST00000574022	HOXD11	P31277	338 aa	Predicted RBP	4.65	□□□□□ -1.67
CHD3-217	ENST00000574022	DMRT2	Q9Y5R5	561 aa		4.61	□□□□□ -1.67
CHD3-217	ENST00000574022	PLCB2	Q00722	1185 aa		4.52	□□□□□ -1.69
CHD3-217	ENST00000574022	ATF5	Q9Y2D1	282 aa	Predicted RBP	4.51	□□□□□ -1.69
CHD3-217	ENST00000574022	FBXO3	Q9UK99	471 aa		4.49	□□□□□ -1.69
CHD3-217	ENST00000574022	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	4.48	□□□□□ -1.69
CHD3-217	ENST00000574022	HNRNPUL2	Q1KMD3	747 aa	Known RBP	4.48	□□□□□ -1.69
CHD3-217	ENST00000574022	HAP1	P54257	671 aa	Predicted RBP	4.47	□□□□□ -1.69
CHD3-217	ENST00000574022	SAMD1	Q6SPF0	538 aa	Predicted RBP	4.47	□□□□□ -1.69
CHD3-217	ENST00000574022	BCAN	Q96GW7	911 aa		4.46	□□□□□ -1.7
CHD3-217	ENST00000574022	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	4.46	□□□□□ -1.7
CHD3-217	ENST00000574022	DCAF8L2	P0C7V8	631 aa		4.44	□□□□□ -1.7
CHD3-217	ENST00000574022	DCAF8L1	A6NGE4	600 aa		4.43	□□□□□ -1.7
CHD3-217	ENST00000574022	PRKCSH	P14314	528 aa	Predicted RBP	4.43	□□□□□ -1.7
CHD3-217	ENST00000574022	SPDYE4	A6NLX3	237 aa		4.42	□□□□□ -1.7
CHD3-217	ENST00000574022	VSIG10	Q8N0Z9	540 aa		4.42	□□□□□ -1.7
CHD3-217	ENST00000574022	ZNF219	Q9P2Y4	722 aa	Predicted RBP	4.42	□□□□□ -1.7
CHD3-217	ENST00000574022	TAOK2	Q9UL54	1235 aa		4.41	□□□□□ -1.7
CHD3-217	ENST00000574022	VASP	P50552	380 aa	Predicted RBP	4.4	□□□□□ -1.71
CHD3-217	ENST00000574022		U3KPZ7	1027 aa	Predicted RBP	4.4	□□□□□ -1.71
CHD3-217	ENST00000574022	IFNLR1	Q8IU57	520 aa	Predicted RBP	4.37	□□□□□ -1.71
CHD3-217	ENST00000574022	PROM2	Q8N271	834 aa		4.36	□□□□□ -1.71
CHD3-217	ENST00000574022	APLP2	Q06481	763 aa		4.35	□□□□□ -1.71
CHD3-217	ENST00000574022	PKD2	Q13563	968 aa		4.35	□□□□□ -1.71
CHD3-217	ENST00000574022	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	4.35	□□□□□ -1.71
CHD3-217	ENST00000574022	TPRN	Q4KMQ1	711 aa		4.34	□□□□□ -1.71
CHD3-217	ENST00000574022	MKRN4P	Q13434	485 aa	Predicted RBP	4.33	□□□□□ -1.72
CHD3-217	ENST00000574022	BBX	Q8WY36	941 aa	Predicted RBP	4.33	□□□□□ -1.72
CHD3-217	ENST00000574022	FBLN2	P98095	1184 aa		4.32	□□□□□ -1.72
CHD3-217	ENST00000574022	KDM2A	Q9Y2K7	1162 aa		4.32	□□□□□ -1.72
CHD3-217	ENST00000574022	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	4.31	□□□□□ -1.72
CHD3-217	ENST00000574022	CFAP44	Q96MT7	982 aa		4.3	□□□□□ -1.72
CHD3-217	ENST00000574022	KLHL34	Q8N239	644 aa		4.29	□□□□□ -1.72
CHD3-217	ENST00000574022	ECM2	O94769	699 aa	Predicted RBP	4.28	□□□□□ -1.72
CHD3-217	ENST00000574022	NPM1	P06748	294 aa	Known RBP eCLIP	4.27	□□□□□ -1.73
CHD3-217	ENST00000574022	SPOCK2	Q92563	424 aa		4.27	□□□□□ -1.73
CHD3-217	ENST00000574022	SPRYD3	Q8NCJ5	442 aa		4.26	□□□□□ -1.73
CHD3-217	ENST00000574022	POLA2	Q14181	598 aa		4.24	□□□□□ -1.73
CHD3-217	ENST00000574022	TSHZ2	Q9NRE2	1034 aa		4.24	□□□□□ -1.73
CHD3-217	ENST00000574022	TRH	P20396	242 aa	Predicted RBP	4.23	□□□□□ -1.73
CHD3-217	ENST00000574022	RGL2	O15211	777 aa		4.21	□□□□□ -1.74
CHD3-217	ENST00000574022	NBR1	Q14596	966 aa		4.2	□□□□□ -1.74
CHD3-217	ENST00000574022	PLCD3	Q8N3E9	789 aa		4.2	□□□□□ -1.74
CHD3-217	ENST00000574022	STAG3	Q9UJ98	1225 aa		4.2	□□□□□ -1.74
CHD3-217	ENST00000574022	CHGA	P10645	457 aa	Known RBP	4.19	□□□□□ -1.74
CHD3-217	ENST00000574022	SPINK5	Q9NQ38	1064 aa	Predicted RBP	4.18	□□□□□ -1.74
CHD3-217	ENST00000574022	ZBTB12	Q9Y330	459 aa	Predicted RBP	4.18	□□□□□ -1.74
CHD3-217	ENST00000574022	TULP1	O00294	542 aa	Predicted RBP	4.17	□□□□□ -1.74
CHD3-217	ENST00000574022	CAPN15	O75808	1086 aa		4.17	□□□□□ -1.74
CHD3-217	ENST00000574022	MIER1	Q8N108	512 aa		4.17	□□□□□ -1.74
CHD3-217	ENST00000574022	CIZ1	Q9ULV3	898 aa	Predicted RBP	4.16	□□□□□ -1.74
CHD3-217	ENST00000574022	GTF3C3	Q9Y5Q9	886 aa		4.16	□□□□□ -1.74
CHD3-217	ENST00000574022	ZNF692	Q9BU19	519 aa	Predicted RBP	4.15	□□□□□ -1.75
CHD3-217	ENST00000574022	DNAJC5	Q9H3Z4	198 aa		4.15	□□□□□ -1.75
CHD3-217	ENST00000574022	TIMELESS	Q9UNS1	1208 aa		4.15	□□□□□ -1.75
CHD3-217	ENST00000574022	ERICH6	Q7L0X2	663 aa		4.14	□□□□□ -1.75
CHD3-217	ENST00000574022	PLEKHG5	O94827	1062 aa		4.12	□□□□□ -1.75
CHD3-217	ENST00000574022	ZBTB47	Q9UFB7	747 aa	Predicted RBP	4.12	□□□□□ -1.75
CHD3-217	ENST00000574022	ABCB7	O75027	752 aa		4.11	□□□□□ -1.75
CHD3-217	ENST00000574022	HS6ST3	Q8IZP7	471 aa		4.11	□□□□□ -1.75
CHD3-217	ENST00000574022	TRIM41	Q8WV44	630 aa		4.11	□□□□□ -1.75
CHD3-217	ENST00000574022	ARX	Q96QS3	562 aa		4.11	□□□□□ -1.75
CHD3-217	ENST00000574022	PABPN1	Q86U42	306 aa	Known RBP eCLIP	4.1	□□□□□ -1.75
CHD3-217	ENST00000574022	SPDYE2B	A6NHP3	402 aa		4.09	□□□□□ -1.75
CHD3-217	ENST00000574022	SPDYE6	P0CI01	402 aa		4.09	□□□□□ -1.75
CHD3-217	ENST00000574022	SPDYE2	Q495Y8	402 aa		4.09	□□□□□ -1.75
CHD3-217	ENST00000574022	TMEM132A	Q24JP5	1023 aa		4.08	□□□□□ -1.76
CHD3-217	ENST00000574022	DAXX	Q9UER7	740 aa	Predicted RBP	4.08	□□□□□ -1.76
CHD3-217	ENST00000574022	SSUH2	Q9Y2M2	353 aa		4.08	□□□□□ -1.76

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