RNA–Protein interactions for RNA: ENST00000572787.1

TOPBP1-210, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 4

Gene TOPBP1, Length 402 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-210ENST00000572787 PRDM10Q9NQV6 1147 aa6.78□□□□□ -1.32
TOPBP1-210ENST00000572787 LIMD1Q9UGP4 676 aa6.78□□□□□ -1.32
TOPBP1-210ENST00000572787 FAN1Q9Y2M0 1017 aa6.78□□□□□ -1.32
TOPBP1-210ENST00000572787 ZEB1P37275 1124 aaPredicted RBP6.77□□□□□ -1.33
TOPBP1-210ENST00000572787 CCAR1Q8IX12 1150 aaKnown RBP6.77□□□□□ -1.33
TOPBP1-210ENST00000572787 TMTC2Q8N394 836 aa6.77□□□□□ -1.33
TOPBP1-210ENST00000572787 UCN2Q96RP3 112 aa6.77□□□□□ -1.33
TOPBP1-210ENST00000572787 NLRP2Q9NX02 1062 aa6.77□□□□□ -1.33
TOPBP1-210ENST00000572787 PRKAG2Q9UGJ0 569 aa6.77□□□□□ -1.33
TOPBP1-210ENST00000572787 CREB3O43889 395 aa6.76□□□□□ -1.33
TOPBP1-210ENST00000572787 LZTS3O60299 673 aaPredicted RBP6.76□□□□□ -1.33
TOPBP1-210ENST00000572787 AP1G2O75843 785 aa6.76□□□□□ -1.33
TOPBP1-210ENST00000572787 HDLBPQ00341 1268 aaKnown RBP6.76□□□□□ -1.33
TOPBP1-210ENST00000572787 RIC3Q7Z5B4 369 aa6.76□□□□□ -1.33
TOPBP1-210ENST00000572787 BACH2Q9BYV9 841 aa6.76□□□□□ -1.33
TOPBP1-210ENST00000572787 CHPF2Q9P2E5 772 aa6.76□□□□□ -1.33
TOPBP1-210ENST00000572787 USP17L8P0C7I0 530 aa6.75□□□□□ -1.33
TOPBP1-210ENST00000572787 PTGER2P43116 358 aa6.75□□□□□ -1.33
TOPBP1-210ENST00000572787 VAC14Q08AM6 782 aa6.75□□□□□ -1.33
TOPBP1-210ENST00000572787 COL19A1Q14993 1142 aa6.75□□□□□ -1.33
TOPBP1-210ENST00000572787 RNF187Q5TA31 235 aaPredicted RBP6.75□□□□□ -1.33
TOPBP1-210ENST00000572787 SOGA3Q5TF21 947 aa6.75□□□□□ -1.33
TOPBP1-210ENST00000572787 DHX38Q92620 1227 aaKnown RBP6.75□□□□□ -1.33
TOPBP1-210ENST00000572787 SGSM3Q96HU1 749 aa6.75□□□□□ -1.33
TOPBP1-210ENST00000572787 PHOX2BQ99453 314 aa6.75□□□□□ -1.33
TOPBP1-210ENST00000572787 GTF2F1P35269 517 aaKnown RBP eCLIP6.74□□□□□ -1.33
TOPBP1-210ENST00000572787 LONRF3Q496Y0 759 aa6.74□□□□□ -1.33
TOPBP1-210ENST00000572787 ZMIZ1Q9ULJ6 1067 aa6.74□□□□□ -1.33
TOPBP1-210ENST00000572787 ERBB3P21860 1342 aa6.74□□□□□ -1.33
TOPBP1-210ENST00000572787 G3V3G9 751 aa6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 U2SURPO15042 1029 aaKnown RBP6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 ATP9BO43861 1147 aa6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 SERPINB4P48594 390 aa6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 MAP3K9P80192 1104 aa6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 TAGLNQ01995 201 aaKnown RBP6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 DSG2Q14126 1118 aa6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 NME8Q8N427 588 aa6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 STK32AQ8WU08 396 aa6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 PMM1Q92871 262 aa6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 GJD4Q96KN9 370 aaPredicted RBP6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 SPOCK3Q9BQ16 436 aa6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 TINF2Q9BSI4 451 aa6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 NOVA2Q9UNW9 492 aaKnown RBP6.73□□□□□ -1.33
TOPBP1-210ENST00000572787 SPTLC1O15269 473 aa6.72□□□□□ -1.33
TOPBP1-210ENST00000572787 SH3BP5O60239 455 aa6.72□□□□□ -1.33
TOPBP1-210ENST00000572787 RAD51AP2Q09MP3 1159 aa6.72□□□□□ -1.33
TOPBP1-210ENST00000572787 FOXD4L6Q3SYB3 417 aaPredicted RBP6.72□□□□□ -1.33
TOPBP1-210ENST00000572787 KANK4Q5T7N3 995 aaPredicted RBP6.72□□□□□ -1.33
TOPBP1-210ENST00000572787 C9orf131Q5VYM1 1079 aa6.72□□□□□ -1.33
TOPBP1-210ENST00000572787 FOXD4L3Q6VB84 417 aaPredicted RBP6.72□□□□□ -1.33
TOPBP1-210ENST00000572787 NLGN1Q8N2Q7 840 aa6.72□□□□□ -1.33
TOPBP1-210ENST00000572787 PPFIA4O75335 1185 aa6.71□□□□□ -1.34
TOPBP1-210ENST00000572787 MCCP23508 829 aa6.71□□□□□ -1.34
TOPBP1-210ENST00000572787 HSD3B2P26439 372 aa6.71□□□□□ -1.34
TOPBP1-210ENST00000572787 SEMA3FQ13275 785 aa6.71□□□□□ -1.34
TOPBP1-210ENST00000572787 TCEAL1Q15170 157 aa6.71□□□□□ -1.34
TOPBP1-210ENST00000572787 TBC1D9Q6ZT07 1266 aa6.71□□□□□ -1.34
TOPBP1-210ENST00000572787 PPARGC1BQ86YN6 1023 aaKnown RBP6.71□□□□□ -1.34
TOPBP1-210ENST00000572787 PRR7Q8TB68 274 aa6.71□□□□□ -1.34
TOPBP1-210ENST00000572787 PIF1Q9H611 641 aa6.71□□□□□ -1.34
TOPBP1-210ENST00000572787 ZSWIM4Q9H7M6 989 aa6.71□□□□□ -1.34
TOPBP1-210ENST00000572787 HOXB1P14653 301 aaPredicted RBP6.7□□□□□ -1.34
TOPBP1-210ENST00000572787 RBL2Q08999 1139 aa6.7□□□□□ -1.34
TOPBP1-210ENST00000572787 GNL2Q13823 731 aaKnown RBP6.7□□□□□ -1.34
TOPBP1-210ENST00000572787 MRPL58Q14197 206 aaKnown RBP6.7□□□□□ -1.34
TOPBP1-210ENST00000572787 ZSCAN29Q8IWY8 852 aaPredicted RBP6.7□□□□□ -1.34
TOPBP1-210ENST00000572787 CLP1Q92989 425 aaKnown RBP6.7□□□□□ -1.34
TOPBP1-210ENST00000572787 ASB16Q96NS5 453 aa6.7□□□□□ -1.34
TOPBP1-210ENST00000572787 TGIF2Q9GZN2 237 aa6.7□□□□□ -1.34
TOPBP1-210ENST00000572787 COL4A3BPQ9Y5P4 624 aa6.7□□□□□ -1.34
TOPBP1-210ENST00000572787 LILRB3O75022 631 aa6.69□□□□□ -1.34
TOPBP1-210ENST00000572787 OATP04181 439 aa6.69□□□□□ -1.34
TOPBP1-210ENST00000572787 FOXK1P85037 733 aa6.69□□□□□ -1.34
TOPBP1-210ENST00000572787 EAPPQ56P03 285 aaPredicted RBP6.69□□□□□ -1.34
TOPBP1-210ENST00000572787 ZFYVE27Q5T4F4 411 aa6.69□□□□□ -1.34
TOPBP1-210ENST00000572787 ZNF746Q6NUN9 644 aaPredicted RBP6.69□□□□□ -1.34
TOPBP1-210ENST00000572787 NT5DC4Q86YG4 428 aa6.69□□□□□ -1.34
TOPBP1-210ENST00000572787 DDX12PQ92771 950 aa6.69□□□□□ -1.34
TOPBP1-210ENST00000572787 CCSER2Q9H7U1 834 aa6.69□□□□□ -1.34
TOPBP1-210ENST00000572787 IQSEC3Q9UPP2 1182 aaPredicted RBP6.69□□□□□ -1.34
TOPBP1-210ENST00000572787 HOXB3P14651 431 aaPredicted RBP6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 GJA5P36382 358 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 DOK7Q18PE1 504 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 PLEKHG6Q3KR16 790 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 TSHZ1Q6ZSZ6 1077 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 CCDC146Q8IYE0 955 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 PMFBP1Q8TBY8 1022 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 EVI5LQ96CN4 794 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 GMLQ99445 158 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 TRIM34Q9BYJ4 488 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 MAF1Q9H063 256 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 IRF2BPLQ9H1B7 796 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 CAPN10Q9HC96 672 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 EGFL7Q9UHF1 273 aa6.68□□□□□ -1.34
TOPBP1-210ENST00000572787 HOXA2O43364 376 aa6.67□□□□□ -1.34
TOPBP1-210ENST00000572787 GPR37L1O60883 481 aa6.67□□□□□ -1.34
TOPBP1-210ENST00000572787 MAPK1P28482 360 aa6.67□□□□□ -1.34
TOPBP1-210ENST00000572787 ITGAEP38570 1179 aa6.67□□□□□ -1.34
TOPBP1-210ENST00000572787 PRIM1P49642 420 aaKnown RBP6.67□□□□□ -1.34
TOPBP1-210ENST00000572787 APLP1P51693 650 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 150.2 ms