RNA–Protein interactions for RNA: ENST00000572787.1

TOPBP1-210, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 4

Gene TOPBP1, Length 402 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-210ENST00000572787 AEBP2Q6ZN18 517 aaPredicted RBP15.33■□□□□ 0.04
TOPBP1-210ENST00000572787 CHIC1Q5VXU3 224 aa14.41□□□□□ -0.1
TOPBP1-210ENST00000572787 SENP3Q9H4L4 574 aaPredicted RBP13.21□□□□□ -0.29
TOPBP1-210ENST00000572787 PHF23Q9BUL5 403 aaPredicted RBP12.97□□□□□ -0.33
TOPBP1-210ENST00000572787 FOXD1Q16676 465 aa12.33□□□□□ -0.44
TOPBP1-210ENST00000572787 POTEDQ86YR6 584 aa12.17□□□□□ -0.46
TOPBP1-210ENST00000572787 MSH5O43196 834 aa11.76□□□□□ -0.53
TOPBP1-210ENST00000572787 PIAS4Q8N2W9 510 aaPredicted RBP11.47□□□□□ -0.57
TOPBP1-210ENST00000572787 PPP6R1Q9UPN7 881 aa11.18□□□□□ -0.62
TOPBP1-210ENST00000572787 PLPPR3Q6T4P5 718 aa11.17□□□□□ -0.62
TOPBP1-210ENST00000572787 ADRA2BP18089 450 aa11.15□□□□□ -0.62
TOPBP1-210ENST00000572787 SLC24A1O60721 1099 aa11.11□□□□□ -0.63
TOPBP1-210ENST00000572787 EHMT2Q96KQ7 1210 aa10.81□□□□□ -0.68
TOPBP1-210ENST00000572787 CACNB1Q02641 598 aaPredicted RBP10.38□□□□□ -0.75
TOPBP1-210ENST00000572787 DMRT2Q9Y5R5 561 aa10.38□□□□□ -0.75
TOPBP1-210ENST00000572787 MAPK8IP2Q13387 824 aaPredicted RBP10.37□□□□□ -0.75
TOPBP1-210ENST00000572787 SCAF1Q9H7N4 1312 aaKnown RBP10.28□□□□□ -0.76
TOPBP1-210ENST00000572787 AMER1Q5JTC6 1135 aaPredicted RBP10.26□□□□□ -0.77
TOPBP1-210ENST00000572787 RTN4Q9NQC3 1192 aaKnown RBP10.21□□□□□ -0.77
TOPBP1-210ENST00000572787 CSRNP3Q8WYN3 585 aa10.2□□□□□ -0.78
TOPBP1-210ENST00000572787 KCNA4P22459 653 aa10.18□□□□□ -0.78
TOPBP1-210ENST00000572787 DCAF8L1A6NGE4 600 aa10.08□□□□□ -0.8
TOPBP1-210ENST00000572787 NCBP3Q53F19 620 aaKnown RBP10.01□□□□□ -0.81
TOPBP1-210ENST00000572787 RNF39Q9H2S5 420 aa9.95□□□□□ -0.82
TOPBP1-210ENST00000572787 SLC4A1APQ9BWU0 796 aaKnown RBP9.92□□□□□ -0.82
TOPBP1-210ENST00000572787 DAXXQ9UER7 740 aaPredicted RBP9.84□□□□□ -0.83
TOPBP1-210ENST00000572787 HOXD11P31277 338 aaPredicted RBP9.82□□□□□ -0.84
TOPBP1-210ENST00000572787 C1QBPQ07021 282 aaKnown RBP9.82□□□□□ -0.84
TOPBP1-210ENST00000572787 PPP4R3CPQ6ZMV5 832 aa9.72□□□□□ -0.85
TOPBP1-210ENST00000572787 RNF216Q9NWF9 866 aaPredicted RBP9.66□□□□□ -0.86
TOPBP1-210ENST00000572787 CNKSR2Q8WXI2 1034 aa9.65□□□□□ -0.86
TOPBP1-210ENST00000572787 DNAJC5BQ9UF47 199 aa9.57□□□□□ -0.88
TOPBP1-210ENST00000572787 PRKCSHP14314 528 aaPredicted RBP9.52□□□□□ -0.89
TOPBP1-210ENST00000572787 ARXQ96QS3 562 aa9.52□□□□□ -0.89
TOPBP1-210ENST00000572787 BCANQ96GW7 911 aa9.49□□□□□ -0.89
TOPBP1-210ENST00000572787 POTEHQ6S545 545 aa9.48□□□□□ -0.89
TOPBP1-210ENST00000572787 TAOK2Q9UL54 1235 aa9.45□□□□□ -0.9
TOPBP1-210ENST00000572787 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.44□□□□□ -0.9
TOPBP1-210ENST00000572787 ZBTB22O15209 634 aa9.36□□□□□ -0.91
TOPBP1-210ENST00000572787 PLCB2Q00722 1185 aa9.36□□□□□ -0.91
TOPBP1-210ENST00000572787 TIMELESSQ9UNS1 1208 aa9.28□□□□□ -0.92
TOPBP1-210ENST00000572787 TPRNQ4KMQ1 711 aa9.25□□□□□ -0.93
TOPBP1-210ENST00000572787 ERICH6Q7L0X2 663 aa9.25□□□□□ -0.93
TOPBP1-210ENST00000572787 HAP1P54257 671 aaPredicted RBP9.23□□□□□ -0.93
TOPBP1-210ENST00000572787 HOMEZQ8IX15 550 aa9.23□□□□□ -0.93
TOPBP1-210ENST00000572787 TULP1O00294 542 aaPredicted RBP9.21□□□□□ -0.94
TOPBP1-210ENST00000572787 CAPN15O75808 1086 aa9.2□□□□□ -0.94
TOPBP1-210ENST00000572787 DSG3P32926 999 aa9.18□□□□□ -0.94
TOPBP1-210ENST00000572787 FKBP8Q14318 412 aa9.17□□□□□ -0.94
TOPBP1-210ENST00000572787 VSIG10Q8N0Z9 540 aa9.16□□□□□ -0.94
TOPBP1-210ENST00000572787 NPM3O75607 178 aaKnown RBP9.15□□□□□ -0.94
TOPBP1-210ENST00000572787 RANGAP1P46060 587 aaPredicted RBP9.14□□□□□ -0.95
TOPBP1-210ENST00000572787 SPINK5Q9NQ38 1064 aaPredicted RBP9.12□□□□□ -0.95
TOPBP1-210ENST00000572787 U3KPZ7 1027 aaPredicted RBP9.11□□□□□ -0.95
TOPBP1-210ENST00000572787 FOXD4L1Q9NU39 408 aa9.1□□□□□ -0.95
TOPBP1-210ENST00000572787 GTF3C3Q9Y5Q9 886 aa9.09□□□□□ -0.95
TOPBP1-210ENST00000572787 TRHP20396 242 aaPredicted RBP8.94□□□□□ -0.98
TOPBP1-210ENST00000572787 APLP2Q06481 763 aa8.92□□□□□ -0.98
TOPBP1-210ENST00000572787 TTBK1Q5TCY1 1321 aaPredicted RBP8.91□□□□□ -0.98
TOPBP1-210ENST00000572787 ABCB7O75027 752 aa8.91□□□□□ -0.98
TOPBP1-210ENST00000572787 ZNF219Q9P2Y4 722 aaPredicted RBP8.9□□□□□ -0.98
TOPBP1-210ENST00000572787 TMEM132AQ24JP5 1023 aa8.88□□□□□ -0.99
TOPBP1-210ENST00000572787 PELP1Q8IZL8 1130 aaKnown RBP8.88□□□□□ -0.99
TOPBP1-210ENST00000572787 PODXL2Q9NZ53 605 aa8.85□□□□□ -0.99
TOPBP1-210ENST00000572787 KDM2AQ9Y2K7 1162 aa8.84□□□□□ -0.99
TOPBP1-210ENST00000572787 C14orf37Q86TY3 774 aa8.83□□□□□ -1
TOPBP1-210ENST00000572787 RBM42Q9BTD8 480 aaKnown RBP8.83□□□□□ -1
TOPBP1-210ENST00000572787 MYT1Q01538 1121 aa8.81□□□□□ -1
TOPBP1-210ENST00000572787 DCAF8L2P0C7V8 631 aa8.8□□□□□ -1
TOPBP1-210ENST00000572787 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.79□□□□□ -1
TOPBP1-210ENST00000572787 HNRNPUL2Q1KMD3 747 aaKnown RBP8.79□□□□□ -1
TOPBP1-210ENST00000572787 CHRDL2Q6WN34 429 aa8.78□□□□□ -1
TOPBP1-210ENST00000572787 SLC4A2P04920 1241 aa8.74□□□□□ -1.01
TOPBP1-210ENST00000572787 FBLN2P98095 1184 aa8.73□□□□□ -1.01
TOPBP1-210ENST00000572787 ATXN8OSP0DMR3 200 aa8.72□□□□□ -1.01
TOPBP1-210ENST00000572787 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.71□□□□□ -1.02
TOPBP1-210ENST00000572787 SAMD1Q6SPF0 538 aaPredicted RBP8.7□□□□□ -1.02
TOPBP1-210ENST00000572787 FBXO3Q9UK99 471 aa8.7□□□□□ -1.02
TOPBP1-210ENST00000572787 SP7Q8TDD2 431 aaPredicted RBP8.68□□□□□ -1.02
TOPBP1-210ENST00000572787 NBR1Q14596 966 aa8.67□□□□□ -1.02
TOPBP1-210ENST00000572787 NPM2Q86SE8 214 aaKnown RBP8.67□□□□□ -1.02
TOPBP1-210ENST00000572787 KLHL34Q8N239 644 aa8.65□□□□□ -1.02
TOPBP1-210ENST00000572787 BBXQ8WY36 941 aaPredicted RBP8.65□□□□□ -1.02
TOPBP1-210ENST00000572787 PAXIP1Q6ZW49 1069 aaPredicted RBP8.61□□□□□ -1.03
TOPBP1-210ENST00000572787 POLA2Q14181 598 aa8.58□□□□□ -1.04
TOPBP1-210ENST00000572787 CFAP44Q96MT7 982 aa8.57□□□□□ -1.04
TOPBP1-210ENST00000572787 SUPT5HO00267 1087 aaKnown RBP8.53□□□□□ -1.04
TOPBP1-210ENST00000572787 AKT1S1Q96B36 256 aa8.51□□□□□ -1.05
TOPBP1-210ENST00000572787 PKD2Q13563 968 aa8.5□□□□□ -1.05
TOPBP1-210ENST00000572787 HAX1O00165 279 aa8.49□□□□□ -1.05
TOPBP1-210ENST00000572787 TRIM26Q12899 539 aaPredicted RBP8.49□□□□□ -1.05
TOPBP1-210ENST00000572787 TSHZ2Q9NRE2 1034 aa8.49□□□□□ -1.05
TOPBP1-210ENST00000572787 SPRYD3Q8NCJ5 442 aa8.48□□□□□ -1.05
TOPBP1-210ENST00000572787 MYCNP04198 464 aaPredicted RBP8.45□□□□□ -1.06
TOPBP1-210ENST00000572787 PIP4P2Q8N4L2 257 aa8.45□□□□□ -1.06
TOPBP1-210ENST00000572787 DNAJC5Q9H3Z4 198 aa8.44□□□□□ -1.06
TOPBP1-210ENST00000572787 VASPP50552 380 aaPredicted RBP8.42□□□□□ -1.06
TOPBP1-210ENST00000572787 REM2Q8IYK8 340 aaPredicted RBP8.42□□□□□ -1.06
TOPBP1-210ENST00000572787 NPM1P06748 294 aaKnown RBP eCLIP8.41□□□□□ -1.06
TOPBP1-210ENST00000572787 UBTFP17480 764 aaKnown RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms