RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 CAMTA1Q9Y6Y1 1673 aa16.07■□□□□ 0.16
SHMT2-216ENST00000554975 DHX57Q6P158 1386 aaKnown RBP16.06■□□□□ 0.16
SHMT2-216ENST00000554975 PMFBP1Q8TBY8 1022 aa16.06■□□□□ 0.16
SHMT2-216ENST00000554975 SLC4A1APQ9BWU0 796 aaKnown RBP16.06■□□□□ 0.16
SHMT2-216ENST00000554975 TRIM37O94972 964 aa16.04■□□□□ 0.16
SHMT2-216ENST00000554975 SAFB2Q14151 953 aaKnown RBP eCLIP16.04■□□□□ 0.16
SHMT2-216ENST00000554975 ANKRD30BQ9BXX2 1392 aa16.03■□□□□ 0.16
SHMT2-216ENST00000554975 SIRT1Q96EB6 747 aa16.01■□□□□ 0.15
SHMT2-216ENST00000554975 PHRF1Q9P1Y6 1649 aaKnown RBP16.01■□□□□ 0.15
SHMT2-216ENST00000554975 ANKARQ7Z5J8 1434 aa16■□□□□ 0.15
SHMT2-216ENST00000554975 APBA3O96018 575 aa15.99■□□□□ 0.15
SHMT2-216ENST00000554975 PRAM1Q96QH2 718 aa15.99■□□□□ 0.15
SHMT2-216ENST00000554975 SPATA31A1Q5TZJ5 1347 aa15.98■□□□□ 0.15
SHMT2-216ENST00000554975 PRR36Q9H6K5 1346 aa15.98■□□□□ 0.15
SHMT2-216ENST00000554975 C14orf93Q9H972 538 aaKnown RBP15.98■□□□□ 0.15
SHMT2-216ENST00000554975 ZNF316A6NFI3 1004 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-216ENST00000554975 CFAP70Q5T0N1 1121 aa15.97■□□□□ 0.15
SHMT2-216ENST00000554975 FAM196AQ6ZSG2 479 aa15.97■□□□□ 0.15
SHMT2-216ENST00000554975 PARD3Q8TEW0 1356 aa15.97■□□□□ 0.15
SHMT2-216ENST00000554975 ACIN1Q9UKV3 1341 aaKnown RBP15.96■□□□□ 0.15
SHMT2-216ENST00000554975 DLC1Q96QB1 1528 aa15.96■□□□□ 0.15
SHMT2-216ENST00000554975 UTRNP46939 3433 aa15.96■□□□□ 0.15
SHMT2-216ENST00000554975 CHRNA2Q15822 529 aa15.95■□□□□ 0.14
SHMT2-216ENST00000554975 HIRIP3Q9BW71 556 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-216ENST00000554975 PRDM11Q9NQV5 511 aa15.95■□□□□ 0.14
SHMT2-216ENST00000554975 KIAA0232Q92628 1395 aa15.95■□□□□ 0.14
SHMT2-216ENST00000554975 CASZ1Q86V15 1759 aa15.95■□□□□ 0.14
SHMT2-216ENST00000554975 SBF2Q86WG5 1849 aa15.94■□□□□ 0.14
SHMT2-216ENST00000554975 RAB3GAP2Q9H2M9 1393 aa15.94■□□□□ 0.14
SHMT2-216ENST00000554975 TULP4Q9NRJ4 1543 aa15.94■□□□□ 0.14
SHMT2-216ENST00000554975 GPRASP1Q5JY77 1395 aa15.93■□□□□ 0.14
SHMT2-216ENST00000554975 DIEXFQ68CQ4 756 aaKnown RBP15.93■□□□□ 0.14
SHMT2-216ENST00000554975 STRN4Q9NRL3 753 aa15.93■□□□□ 0.14
SHMT2-216ENST00000554975 ADGRB1O14514 1584 aa15.92■□□□□ 0.14
SHMT2-216ENST00000554975 NINLQ9Y2I6 1382 aa15.92■□□□□ 0.14
SHMT2-216ENST00000554975 PPP1R1BQ9UD71 204 aaPredicted RBP15.92■□□□□ 0.14
SHMT2-216ENST00000554975 NRKQ7Z2Y5 1582 aa15.92■□□□□ 0.14
SHMT2-216ENST00000554975 KCNQ2O43526 872 aa15.91■□□□□ 0.14
SHMT2-216ENST00000554975 SPON1Q9HCB6 807 aa15.91■□□□□ 0.14
SHMT2-216ENST00000554975 USP35Q9P2H5 1018 aa15.91■□□□□ 0.14
SHMT2-216ENST00000554975 MYOM1P52179 1685 aa15.91■□□□□ 0.14
SHMT2-216ENST00000554975 ITSN1Q15811 1721 aa15.91■□□□□ 0.14
SHMT2-216ENST00000554975 PARP4Q9UKK3 1724 aaKnown RBP15.91■□□□□ 0.14
SHMT2-216ENST00000554975 CHD4Q14839 1912 aa15.9■□□□□ 0.14
SHMT2-216ENST00000554975 LMO7Q8WWI1 1683 aa15.9■□□□□ 0.14
SHMT2-216ENST00000554975 PAK3O75914 559 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-216ENST00000554975 POGKQ9P215 609 aa15.9■□□□□ 0.14
SHMT2-216ENST00000554975 SSH2Q76I76 1423 aa15.9■□□□□ 0.14
SHMT2-216ENST00000554975 PEAK1Q9H792 1746 aa15.9■□□□□ 0.14
SHMT2-216ENST00000554975 MINK1Q8N4C8 1332 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-216ENST00000554975 RGPD3A6NKT7 1758 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-216ENST00000554975 RGPD4Q7Z3J3 1758 aa15.9■□□□□ 0.14
SHMT2-216ENST00000554975 ZC3H6P61129 1189 aaKnown RBP15.89■□□□□ 0.13
SHMT2-216ENST00000554975 NBPF8Q3BBV2 869 aa15.89■□□□□ 0.13
SHMT2-216ENST00000554975 NBPF14Q5TI25 921 aa15.89■□□□□ 0.13
SHMT2-216ENST00000554975 PDE3BQ13370 1112 aa15.87■□□□□ 0.13
SHMT2-216ENST00000554975 NUTM2GQ5VZR2 741 aa15.87■□□□□ 0.13
SHMT2-216ENST00000554975 MPHOSPH9Q99550 1183 aa15.87■□□□□ 0.13
SHMT2-216ENST00000554975 PDGFDQ9GZP0 370 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-216ENST00000554975 LARP1Q6PKG0 1096 aaKnown RBP15.86■□□□□ 0.13
SHMT2-216ENST00000554975 BARGINQ6ZT62 677 aa15.86■□□□□ 0.13
SHMT2-216ENST00000554975 ZNF784Q8NCA9 323 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-216ENST00000554975 NGDNQ8NEJ9 315 aaKnown RBP15.86■□□□□ 0.13
SHMT2-216ENST00000554975 ANO8Q9HCE9 1232 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-216ENST00000554975 TRAK1Q9UPV9 953 aa15.86■□□□□ 0.13
SHMT2-216ENST00000554975 ARHGEF28Q8N1W1 1705 aaKnown RBP15.85■□□□□ 0.13
SHMT2-216ENST00000554975 ATP7BP35670 1465 aa15.85■□□□□ 0.13
SHMT2-216ENST00000554975 WASLO00401 505 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-216ENST00000554975 TOPAZ1Q8N9V7 1692 aa15.85■□□□□ 0.13
SHMT2-216ENST00000554975 LRRC37A3O60309 1634 aa15.84■□□□□ 0.13
SHMT2-216ENST00000554975 DCAF8L1A6NGE4 600 aa15.83■□□□□ 0.12
SHMT2-216ENST00000554975 EIF3AQ14152 1382 aaKnown RBP15.83■□□□□ 0.12
SHMT2-216ENST00000554975 WNK3Q9BYP7 1800 aa15.82■□□□□ 0.12
SHMT2-216ENST00000554975 PTF1AQ7RTS3 328 aa15.82■□□□□ 0.12
SHMT2-216ENST00000554975 TCP11L2Q8N4U5 519 aa15.82■□□□□ 0.12
SHMT2-216ENST00000554975 EVA1CP58658 441 aa15.81■□□□□ 0.12
SHMT2-216ENST00000554975 TIMELESSQ9UNS1 1208 aa15.81■□□□□ 0.12
SHMT2-216ENST00000554975 CENPBP07199 599 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-216ENST00000554975 AKAP12Q02952 1782 aa15.8■□□□□ 0.12
SHMT2-216ENST00000554975 SENP3-EIF4A1A0A087X0R7 540 aa15.79■□□□□ 0.12
SHMT2-216ENST00000554975 ZBTB7AO95365 584 aa15.79■□□□□ 0.12
SHMT2-216ENST00000554975 PTGER2P43116 358 aa15.79■□□□□ 0.12
SHMT2-216ENST00000554975 COL5A2P05997 1499 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-216ENST00000554975 OVOS2A0A0G2JMS6 1433 aa15.78■□□□□ 0.12
SHMT2-216ENST00000554975 OVOS2A0A0J9YW53 1432 aa15.78■□□□□ 0.12
SHMT2-216ENST00000554975 OVOS2Q6IE36 1432 aa15.78■□□□□ 0.12
SHMT2-216ENST00000554975 NUDT16Q96DE0 195 aaKnown RBP15.78■□□□□ 0.12
SHMT2-216ENST00000554975 PROM2Q8N271 834 aa15.77■□□□□ 0.12
SHMT2-216ENST00000554975 CPDO75976 1380 aa15.76■□□□□ 0.11
SHMT2-216ENST00000554975 ATF5Q9Y2D1 282 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-216ENST00000554975 POLR3AO14802 1390 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-216ENST00000554975 RGPD5Q99666 1765 aa15.75■□□□□ 0.11
SHMT2-216ENST00000554975 USP19O94966 1318 aa15.75■□□□□ 0.11
SHMT2-216ENST00000554975 ACEP12821 1306 aa15.75■□□□□ 0.11
SHMT2-216ENST00000554975 PLSCR1O15162 318 aa15.75■□□□□ 0.11
SHMT2-216ENST00000554975 C1QTNF8P60827 252 aa15.75■□□□□ 0.11
SHMT2-216ENST00000554975 THRAP3Q9Y2W1 955 aaKnown RBP15.75■□□□□ 0.11
SHMT2-216ENST00000554975 COL18A1P39060 1754 aa15.75■□□□□ 0.11
SHMT2-216ENST00000554975 IFFO2Q5TF58 517 aa15.73■□□□□ 0.11
SHMT2-216ENST00000554975 SYT17Q9BSW7 474 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms