RNA–Protein interactions for RNA: ENST00000553846.1

PRKCH-208, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-208	ENST00000553846	RGL3	Q3MIN7	710 aa		13.73	□□□□□ -0.21
PRKCH-208	ENST00000553846	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.73	□□□□□ -0.21
PRKCH-208	ENST00000553846	SPATA31A1	Q5TZJ5	1347 aa		13.72	□□□□□ -0.21
PRKCH-208	ENST00000553846	ACIN1	Q9UKV3	1341 aa	Known RBP	13.72	□□□□□ -0.21
PRKCH-208	ENST00000553846	PRAM1	Q96QH2	718 aa		13.72	□□□□□ -0.21
PRKCH-208	ENST00000553846	PLEKHG5	O94827	1062 aa		13.71	□□□□□ -0.21
PRKCH-208	ENST00000553846	PMFBP1	Q8TBY8	1022 aa		13.71	□□□□□ -0.21
PRKCH-208	ENST00000553846	LMO7	Q8WWI1	1683 aa		13.71	□□□□□ -0.21
PRKCH-208	ENST00000553846		A0A0G2JS52	829 aa		13.7	□□□□□ -0.22
PRKCH-208	ENST00000553846	MYT1	Q01538	1121 aa		13.7	□□□□□ -0.22
PRKCH-208	ENST00000553846	CFAP70	Q5T0N1	1121 aa		13.7	□□□□□ -0.22
PRKCH-208	ENST00000553846	LMOD2	Q6P5Q4	547 aa		13.7	□□□□□ -0.22
PRKCH-208	ENST00000553846	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.7	□□□□□ -0.22
PRKCH-208	ENST00000553846	RGPD4	Q7Z3J3	1758 aa		13.7	□□□□□ -0.22
PRKCH-208	ENST00000553846	PEAK1	Q9H792	1746 aa		13.7	□□□□□ -0.22
PRKCH-208	ENST00000553846	DHX57	Q6P158	1386 aa	Known RBP	13.7	□□□□□ -0.22
PRKCH-208	ENST00000553846	CASZ1	Q86V15	1759 aa		13.69	□□□□□ -0.22
PRKCH-208	ENST00000553846	YY1	P25490	414 aa		13.69	□□□□□ -0.22
PRKCH-208	ENST00000553846	NRK	Q7Z2Y5	1582 aa		13.69	□□□□□ -0.22
PRKCH-208	ENST00000553846	CAMTA1	Q9Y6Y1	1673 aa		13.69	□□□□□ -0.22
PRKCH-208	ENST00000553846	ATP7B	P35670	1465 aa		13.68	□□□□□ -0.22
PRKCH-208	ENST00000553846	TRIM37	O94972	964 aa		13.68	□□□□□ -0.22
PRKCH-208	ENST00000553846	KIAA0232	Q92628	1395 aa		13.68	□□□□□ -0.22
PRKCH-208	ENST00000553846	NINL	Q9Y2I6	1382 aa		13.68	□□□□□ -0.22
PRKCH-208	ENST00000553846	PARP4	Q9UKK3	1724 aa	Known RBP	13.67	□□□□□ -0.22
PRKCH-208	ENST00000553846	TOPAZ1	Q8N9V7	1692 aa		13.67	□□□□□ -0.22
PRKCH-208	ENST00000553846	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
PRKCH-208	ENST00000553846	FAM196A	Q6ZSG2	479 aa		13.67	□□□□□ -0.22
PRKCH-208	ENST00000553846	ITSN1	Q15811	1721 aa		13.67	□□□□□ -0.22
PRKCH-208	ENST00000553846	SSH2	Q76I76	1423 aa		13.66	□□□□□ -0.22
PRKCH-208	ENST00000553846	MPHOSPH9	Q99550	1183 aa		13.66	□□□□□ -0.22
PRKCH-208	ENST00000553846	GPRASP1	Q5JY77	1395 aa		13.66	□□□□□ -0.22
PRKCH-208	ENST00000553846	BARGIN	Q6ZT62	677 aa		13.65	□□□□□ -0.22
PRKCH-208	ENST00000553846	PRDM11	Q9NQV5	511 aa		13.65	□□□□□ -0.22
PRKCH-208	ENST00000553846	EIF3A	Q14152	1382 aa	Known RBP	13.65	□□□□□ -0.22
PRKCH-208	ENST00000553846	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.64	□□□□□ -0.23
PRKCH-208	ENST00000553846	SBF2	Q86WG5	1849 aa		13.64	□□□□□ -0.23
PRKCH-208	ENST00000553846	APBA3	O96018	575 aa		13.63	□□□□□ -0.23
PRKCH-208	ENST00000553846	CHRNA2	Q15822	529 aa		13.62	□□□□□ -0.23
PRKCH-208	ENST00000553846	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.62	□□□□□ -0.23
PRKCH-208	ENST00000553846	LRRC37A3	O60309	1634 aa		13.61	□□□□□ -0.23
PRKCH-208	ENST00000553846	POLR3A	O14802	1390 aa	Predicted RBP	13.61	□□□□□ -0.23
PRKCH-208	ENST00000553846	CPD	O75976	1380 aa		13.61	□□□□□ -0.23
PRKCH-208	ENST00000553846	MYOM1	P52179	1685 aa		13.61	□□□□□ -0.23
PRKCH-208	ENST00000553846	WASL	O00401	505 aa	Predicted RBP	13.61	□□□□□ -0.23
PRKCH-208	ENST00000553846	CEP350	Q5VT06	3117 aa		13.61	□□□□□ -0.23
PRKCH-208	ENST00000553846	GOLGB1	Q14789	3259 aa	Known RBP	13.6	□□□□□ -0.23
PRKCH-208	ENST00000553846	USP19	O94966	1318 aa		13.6	□□□□□ -0.23
PRKCH-208	ENST00000553846	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.6	□□□□□ -0.23
PRKCH-208	ENST00000553846	KCNQ2	O43526	872 aa		13.59	□□□□□ -0.23
PRKCH-208	ENST00000553846	SPON1	Q9HCB6	807 aa		13.59	□□□□□ -0.23
PRKCH-208	ENST00000553846	POGK	Q9P215	609 aa		13.59	□□□□□ -0.23
PRKCH-208	ENST00000553846	COL5A2	P05997	1499 aa	Predicted RBP	13.59	□□□□□ -0.23
PRKCH-208	ENST00000553846	WNK3	Q9BYP7	1800 aa		13.59	□□□□□ -0.23
PRKCH-208	ENST00000553846	LARP1	Q6PKG0	1096 aa	Known RBP	13.58	□□□□□ -0.24
PRKCH-208	ENST00000553846	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.58	□□□□□ -0.24
PRKCH-208	ENST00000553846	STRN4	Q9NRL3	753 aa		13.57	□□□□□ -0.24
PRKCH-208	ENST00000553846	TRAK1	Q9UPV9	953 aa		13.57	□□□□□ -0.24
PRKCH-208	ENST00000553846	ZC3H6	P61129	1189 aa	Known RBP	13.56	□□□□□ -0.24
PRKCH-208	ENST00000553846	TCP11L2	Q8N4U5	519 aa		13.56	□□□□□ -0.24
PRKCH-208	ENST00000553846	NGDN	Q8NEJ9	315 aa	Known RBP	13.56	□□□□□ -0.24
PRKCH-208	ENST00000553846	OVOS2	A0A0G2JMS6	1433 aa		13.56	□□□□□ -0.24
PRKCH-208	ENST00000553846	OVOS2	A0A0J9YW53	1432 aa		13.56	□□□□□ -0.24
PRKCH-208	ENST00000553846	OVOS2	Q6IE36	1432 aa		13.56	□□□□□ -0.24
PRKCH-208	ENST00000553846	PTGER2	P43116	358 aa		13.55	□□□□□ -0.24
PRKCH-208	ENST00000553846	NBPF8	Q3BBV2	869 aa		13.55	□□□□□ -0.24
PRKCH-208	ENST00000553846	NBPF14	Q5TI25	921 aa		13.55	□□□□□ -0.24
PRKCH-208	ENST00000553846	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.55	□□□□□ -0.24
PRKCH-208	ENST00000553846	COL18A1	P39060	1754 aa		13.55	□□□□□ -0.24
PRKCH-208	ENST00000553846	BCL9	O00512	1426 aa		13.55	□□□□□ -0.24
PRKCH-208	ENST00000553846	PLSCR1	O15162	318 aa		13.54	□□□□□ -0.24
PRKCH-208	ENST00000553846	PAK3	O75914	559 aa	Predicted RBP	13.54	□□□□□ -0.24
PRKCH-208	ENST00000553846	PDE3B	Q13370	1112 aa		13.54	□□□□□ -0.24
PRKCH-208	ENST00000553846	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.54	□□□□□ -0.24
PRKCH-208	ENST00000553846	NUDT16	Q96DE0	195 aa	Known RBP	13.54	□□□□□ -0.24
PRKCH-208	ENST00000553846	USP35	Q9P2H5	1018 aa		13.54	□□□□□ -0.24
PRKCH-208	ENST00000553846	THRAP3	Q9Y2W1	955 aa	Known RBP	13.54	□□□□□ -0.24
PRKCH-208	ENST00000553846	PTF1A	Q7RTS3	328 aa		13.53	□□□□□ -0.24
PRKCH-208	ENST00000553846	PROM2	Q8N271	834 aa		13.53	□□□□□ -0.24
PRKCH-208	ENST00000553846	SLIT3	O75094	1523 aa		13.53	□□□□□ -0.24
PRKCH-208	ENST00000553846	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.52	□□□□□ -0.25
PRKCH-208	ENST00000553846	CRB1	P82279	1406 aa		13.52	□□□□□ -0.25
PRKCH-208	ENST00000553846	CHD4	Q14839	1912 aa		13.52	□□□□□ -0.25
PRKCH-208	ENST00000553846	PAPPA	Q13219	1627 aa		13.51	□□□□□ -0.25
PRKCH-208	ENST00000553846	PLEKHG3	A1L390	1219 aa		13.51	□□□□□ -0.25
PRKCH-208	ENST00000553846	NUTM2G	Q5VZR2	741 aa		13.51	□□□□□ -0.25
PRKCH-208	ENST00000553846	SGIP1	Q9BQI5	828 aa		13.51	□□□□□ -0.25
PRKCH-208	ENST00000553846	AATK	Q6ZMQ8	1374 aa		13.5	□□□□□ -0.25
PRKCH-208	ENST00000553846	ACE	P12821	1306 aa		13.5	□□□□□ -0.25
PRKCH-208	ENST00000553846	C11orf95	C9JLR9	678 aa	Predicted RBP	13.5	□□□□□ -0.25
PRKCH-208	ENST00000553846	AKAP12	Q02952	1782 aa		13.5	□□□□□ -0.25
PRKCH-208	ENST00000553846	PIK3C2A	O00443	1686 aa		13.48	□□□□□ -0.25
PRKCH-208	ENST00000553846	KIAA1210	Q9ULL0	1709 aa		13.47	□□□□□ -0.25
PRKCH-208	ENST00000553846	GC	P02774	474 aa		13.47	□□□□□ -0.25
PRKCH-208	ENST00000553846	EVA1C	P58658	441 aa		13.47	□□□□□ -0.25
PRKCH-208	ENST00000553846	CDK19	Q9BWU1	502 aa		13.47	□□□□□ -0.25
PRKCH-208	ENST00000553846	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.47	□□□□□ -0.25
PRKCH-208	ENST00000553846	CCDC61	Q9Y6R9	512 aa		13.47	□□□□□ -0.25
PRKCH-208	ENST00000553846	MAP3K5	Q99683	1374 aa		13.46	□□□□□ -0.25
PRKCH-208	ENST00000553846	ZBTB7A	O95365	584 aa		13.46	□□□□□ -0.25

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