RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 KCNQ2O43526 872 aa20.83■□□□□ 0.93
PRPF39-204ENST00000553605 SPATA31A1Q5TZJ5 1347 aa20.82■□□□□ 0.92
PRPF39-204ENST00000553605 PIK3C2GO75747 1445 aa20.82■□□□□ 0.92
PRPF39-204ENST00000553605 SAFB2Q14151 953 aaKnown RBP eCLIP20.82■□□□□ 0.92
PRPF39-204ENST00000553605 NINLQ9Y2I6 1382 aa20.82■□□□□ 0.92
PRPF39-204ENST00000553605 PRDM11Q9NQV5 511 aa20.81■□□□□ 0.92
PRPF39-204ENST00000553605 PRAM1Q96QH2 718 aa20.8■□□□□ 0.92
PRPF39-204ENST00000553605 GPRASP1Q5JY77 1395 aa20.8■□□□□ 0.92
PRPF39-204ENST00000553605 PPARGC1BQ86YN6 1023 aaKnown RBP20.79■□□□□ 0.92
PRPF39-204ENST00000553605 RREB1Q92766 1687 aa20.79■□□□□ 0.92
PRPF39-204ENST00000553605 SPATA31E1Q6ZUB1 1445 aa20.78■□□□□ 0.92
PRPF39-204ENST00000553605 ANKARQ7Z5J8 1434 aa20.78■□□□□ 0.92
PRPF39-204ENST00000553605 TRPM3Q9HCF6 1732 aaPredicted RBP20.78■□□□□ 0.92
PRPF39-204ENST00000553605 PDE3BQ13370 1112 aa20.78■□□□□ 0.92
PRPF39-204ENST00000553605 C14orf93Q9H972 538 aaKnown RBP20.78■□□□□ 0.92
PRPF39-204ENST00000553605 DHX57Q6P158 1386 aaKnown RBP20.77■□□□□ 0.92
PRPF39-204ENST00000553605 STRN4Q9NRL3 753 aa20.77■□□□□ 0.92
PRPF39-204ENST00000553605 NUP188Q5SRE5 1749 aa20.77■□□□□ 0.92
PRPF39-204ENST00000553605 ALS2Q96Q42 1657 aa20.77■□□□□ 0.91
PRPF39-204ENST00000553605 ACIN1Q9UKV3 1341 aaKnown RBP20.76■□□□□ 0.91
PRPF39-204ENST00000553605 ZNF784Q8NCA9 323 aaPredicted RBP20.75■□□□□ 0.91
PRPF39-204ENST00000553605 POGKQ9P215 609 aa20.75■□□□□ 0.91
PRPF39-204ENST00000553605 USP35Q9P2H5 1018 aa20.75■□□□□ 0.91
PRPF39-204ENST00000553605 PAK3O75914 559 aaPredicted RBP20.74■□□□□ 0.91
PRPF39-204ENST00000553605 CHRNA2Q15822 529 aa20.74■□□□□ 0.91
PRPF39-204ENST00000553605 CFAP70Q5T0N1 1121 aa20.73■□□□□ 0.91
PRPF39-204ENST00000553605 KIAA0232Q92628 1395 aa20.72■□□□□ 0.91
PRPF39-204ENST00000553605 SENP3-EIF4A1A0A087X0R7 540 aa20.72■□□□□ 0.91
PRPF39-204ENST00000553605 BARGINQ6ZT62 677 aa20.72■□□□□ 0.91
PRPF39-204ENST00000553605 CAMTA1Q9Y6Y1 1673 aa20.71■□□□□ 0.91
PRPF39-204ENST00000553605 EVA1CP58658 441 aa20.71■□□□□ 0.91
PRPF39-204ENST00000553605 IFFO2Q5TF58 517 aa20.71■□□□□ 0.91
PRPF39-204ENST00000553605 NGDNQ8NEJ9 315 aaKnown RBP20.7■□□□□ 0.9
PRPF39-204ENST00000553605 CRYBG1Q9Y4K1 1723 aa20.7■□□□□ 0.9
PRPF39-204ENST00000553605 HIRIP3Q9BW71 556 aaPredicted RBP20.69■□□□□ 0.9
PRPF39-204ENST00000553605 PRR36Q9H6K5 1346 aa20.69■□□□□ 0.9
PRPF39-204ENST00000553605 ZC3H6P61129 1189 aaKnown RBP20.68■□□□□ 0.9
PRPF39-204ENST00000553605 C1QTNF8P60827 252 aa20.66■□□□□ 0.9
PRPF39-204ENST00000553605 EIF3AQ14152 1382 aaKnown RBP20.66■□□□□ 0.9
PRPF39-204ENST00000553605 DLC1Q96QB1 1528 aa20.65■□□□□ 0.9
PRPF39-204ENST00000553605 TCP11L2Q8N4U5 519 aa20.65■□□□□ 0.9
PRPF39-204ENST00000553605 UTRNP46939 3433 aa20.65■□□□□ 0.9
PRPF39-204ENST00000553605 SSH2Q76I76 1423 aa20.64■□□□□ 0.89
PRPF39-204ENST00000553605 MINK1Q8N4C8 1332 aaPredicted RBP20.64■□□□□ 0.89
PRPF39-204ENST00000553605 LARP1Q6PKG0 1096 aaKnown RBP20.64■□□□□ 0.89
PRPF39-204ENST00000553605 C11orf95C9JLR9 678 aaPredicted RBP20.63■□□□□ 0.89
PRPF39-204ENST00000553605 WASLO00401 505 aaPredicted RBP20.63■□□□□ 0.89
PRPF39-204ENST00000553605 PLSCR1O15162 318 aa20.62■□□□□ 0.89
PRPF39-204ENST00000553605 TRAK1Q9UPV9 953 aa20.62■□□□□ 0.89
PRPF39-204ENST00000553605 TULP4Q9NRJ4 1543 aa20.62■□□□□ 0.89
PRPF39-204ENST00000553605 NRKQ7Z2Y5 1582 aa20.61■□□□□ 0.89
PRPF39-204ENST00000553605 NUTM2GQ5VZR2 741 aa20.61■□□□□ 0.89
PRPF39-204ENST00000553605 MPHOSPH9Q99550 1183 aa20.61■□□□□ 0.89
PRPF39-204ENST00000553605 ANO8Q9HCE9 1232 aaPredicted RBP20.61■□□□□ 0.89
PRPF39-204ENST00000553605 THRAP3Q9Y2W1 955 aaKnown RBP20.61■□□□□ 0.89
PRPF39-204ENST00000553605 ZBTB7AO95365 584 aa20.6■□□□□ 0.89
PRPF39-204ENST00000553605 PDGFDQ9GZP0 370 aaPredicted RBP20.6■□□□□ 0.89
PRPF39-204ENST00000553605 PTGER2P43116 358 aa20.59■□□□□ 0.89
PRPF39-204ENST00000553605 PHRF1Q9P1Y6 1649 aaKnown RBP20.59■□□□□ 0.89
PRPF39-204ENST00000553605 CASZ1Q86V15 1759 aa20.57■□□□□ 0.88
PRPF39-204ENST00000553605 SYT17Q9BSW7 474 aa20.57■□□□□ 0.88
PRPF39-204ENST00000553605 BCL11BQ9C0K0 894 aaPredicted RBP20.57■□□□□ 0.88
PRPF39-204ENST00000553605 ATF5Q9Y2D1 282 aaPredicted RBP20.57■□□□□ 0.88
PRPF39-204ENST00000553605 FHDC1Q9C0D6 1143 aaPredicted RBP20.56■□□□□ 0.88
PRPF39-204ENST00000553605 ATP7BP35670 1465 aa20.55■□□□□ 0.88
PRPF39-204ENST00000553605 MYOM1P52179 1685 aa20.54■□□□□ 0.88
PRPF39-204ENST00000553605 OVOS2A0A0G2JMS6 1433 aa20.54■□□□□ 0.88
PRPF39-204ENST00000553605 OVOS2A0A0J9YW53 1432 aa20.54■□□□□ 0.88
PRPF39-204ENST00000553605 OVOS2Q6IE36 1432 aa20.54■□□□□ 0.88
PRPF39-204ENST00000553605 NUDT16Q96DE0 195 aaKnown RBP20.54■□□□□ 0.88
PRPF39-204ENST00000553605 RGPD3A6NKT7 1758 aaPredicted RBP20.54■□□□□ 0.88
PRPF39-204ENST00000553605 RGPD4Q7Z3J3 1758 aa20.54■□□□□ 0.88
PRPF39-204ENST00000553605 PROM2Q8N271 834 aa20.53■□□□□ 0.88
PRPF39-204ENST00000553605 PARP4Q9UKK3 1724 aaKnown RBP20.53■□□□□ 0.88
PRPF39-204ENST00000553605 ADGRB1O14514 1584 aa20.52■□□□□ 0.88
PRPF39-204ENST00000553605 CPDO75976 1380 aa20.52■□□□□ 0.88
PRPF39-204ENST00000553605 CHD4Q14839 1912 aa20.51■□□□□ 0.87
PRPF39-204ENST00000553605 PTF1AQ7RTS3 328 aa20.51■□□□□ 0.87
PRPF39-204ENST00000553605 ABTB2Q8N961 1025 aa20.51■□□□□ 0.87
PRPF39-204ENST00000553605 PEAK1Q9H792 1746 aa20.5■□□□□ 0.87
PRPF39-204ENST00000553605 LMO7Q8WWI1 1683 aa20.49■□□□□ 0.87
PRPF39-204ENST00000553605 DDB1Q16531 1140 aa20.49■□□□□ 0.87
PRPF39-204ENST00000553605 STK32BQ9NY57 414 aa20.49■□□□□ 0.87
PRPF39-204ENST00000553605 ACEP12821 1306 aa20.48■□□□□ 0.87
PRPF39-204ENST00000553605 SBF2Q86WG5 1849 aa20.48■□□□□ 0.87
PRPF39-204ENST00000553605 ITSN1Q15811 1721 aa20.47■□□□□ 0.87
PRPF39-204ENST00000553605 CRB1P82279 1406 aa20.47■□□□□ 0.87
PRPF39-204ENST00000553605 SLC15A2Q16348 729 aa20.47■□□□□ 0.87
PRPF39-204ENST00000553605 MTFR1LQ9H019 292 aa20.47■□□□□ 0.87
PRPF39-204ENST00000553605 COL5A2P05997 1499 aaPredicted RBP20.47■□□□□ 0.87
PRPF39-204ENST00000553605 GIGYF1O75420 1035 aaPredicted RBP20.46■□□□□ 0.87
PRPF39-204ENST00000553605 GCP02774 474 aa20.46■□□□□ 0.87
PRPF39-204ENST00000553605 SGIP1Q9BQI5 828 aa20.46■□□□□ 0.87
PRPF39-204ENST00000553605 USP19O94966 1318 aa20.46■□□□□ 0.87
PRPF39-204ENST00000553605 POLR3AO14802 1390 aaPredicted RBP20.46■□□□□ 0.87
PRPF39-204ENST00000553605 TXNRD1Q16881 649 aa20.45■□□□□ 0.86
PRPF39-204ENST00000553605 NLRP13Q86W25 1043 aa20.44■□□□□ 0.86
PRPF39-204ENST00000553605 CDK19Q9BWU1 502 aa20.44■□□□□ 0.86
PRPF39-204ENST00000553605 ARXQ96QS3 562 aa20.43■□□□□ 0.86
PRPF39-204ENST00000553605 CCDC61Q9Y6R9 512 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms