RNA–Protein interactions for RNA: ENST00000541963.5

CPSF7-220, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4 BASIC

Gene CPSF7, Length 549 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-220ENST00000541963 CUL7Q14999 1698 aa8.89□□□□□ -0.99
CPSF7-220ENST00000541963 PUS10Q3MIT2 529 aaKnown RBP8.89□□□□□ -0.99
CPSF7-220ENST00000541963 MORN1Q5T089 497 aa8.89□□□□□ -0.99
CPSF7-220ENST00000541963 POM121Q96HA1 1249 aa8.89□□□□□ -0.99
CPSF7-220ENST00000541963 CEP170Q5SW79 1584 aa8.88□□□□□ -0.99
CPSF7-220ENST00000541963 ARID3CA6NKF2 412 aa8.88□□□□□ -0.99
CPSF7-220ENST00000541963 NR1I2O75469 434 aa8.88□□□□□ -0.99
CPSF7-220ENST00000541963 BCAMP50895 628 aa8.88□□□□□ -0.99
CPSF7-220ENST00000541963 RETREG3Q86VR2 466 aa8.88□□□□□ -0.99
CPSF7-220ENST00000541963 MTMR14Q8NCE2 650 aa8.88□□□□□ -0.99
CPSF7-220ENST00000541963 ARID3AQ99856 593 aa8.88□□□□□ -0.99
CPSF7-220ENST00000541963 SLC27A5Q9Y2P5 690 aa8.88□□□□□ -0.99
CPSF7-220ENST00000541963 ZNF330Q9Y3S2 320 aaPredicted RBP8.88□□□□□ -0.99
CPSF7-220ENST00000541963 PCDHB3Q9Y5E6 796 aa8.88□□□□□ -0.99
CPSF7-220ENST00000541963 ARAP1Q96P48 1450 aa8.88□□□□□ -0.99
CPSF7-220ENST00000541963 ABL2P42684 1182 aa8.87□□□□□ -0.99
CPSF7-220ENST00000541963 CTDSPL2Q05D32 466 aa8.87□□□□□ -0.99
CPSF7-220ENST00000541963 PRR7Q8TB68 274 aa8.87□□□□□ -0.99
CPSF7-220ENST00000541963 GDPD2Q9HCC8 539 aa8.87□□□□□ -0.99
CPSF7-220ENST00000541963 SYMPKQ92797 1274 aaKnown RBP8.86□□□□□ -0.99
CPSF7-220ENST00000541963 ZNF777Q9ULD5 760 aaPredicted RBP8.86□□□□□ -0.99
CPSF7-220ENST00000541963 NDUFB9Q9Y6M9 179 aa8.86□□□□□ -0.99
CPSF7-220ENST00000541963 CFAP99D6REC4 459 aa8.85□□□□□ -0.99
CPSF7-220ENST00000541963 FMNL1O95466 1100 aaPredicted RBP8.85□□□□□ -0.99
CPSF7-220ENST00000541963 PNMA1Q8ND90 353 aa8.85□□□□□ -0.99
CPSF7-220ENST00000541963 APLP1P51693 650 aa8.84□□□□□ -0.99
CPSF7-220ENST00000541963 PRG4Q92954 1404 aaPredicted RBP8.84□□□□□ -0.99
CPSF7-220ENST00000541963 SALL2Q9Y467 1007 aaPredicted RBP8.84□□□□□ -0.99
CPSF7-220ENST00000541963 KIAA0586Q9BVV6 1533 aa8.84□□□□□ -0.99
CPSF7-220ENST00000541963 FNBP4Q8N3X1 1017 aaPredicted RBP8.83□□□□□ -1
CPSF7-220ENST00000541963 USB1Q9BQ65 265 aaKnown RBP8.83□□□□□ -1
CPSF7-220ENST00000541963 SHROOM2Q13796 1616 aa8.83□□□□□ -1
CPSF7-220ENST00000541963 RAPGEF2Q9Y4G8 1499 aa8.83□□□□□ -1
CPSF7-220ENST00000541963 DESI1Q6ICB0 168 aa8.82□□□□□ -1
CPSF7-220ENST00000541963 NYAP1Q6ZVC0 841 aa8.82□□□□□ -1
CPSF7-220ENST00000541963 SCUBE3Q8IX30 993 aa8.82□□□□□ -1
CPSF7-220ENST00000541963 KCTD12Q96CX2 325 aaKnown RBP8.82□□□□□ -1
CPSF7-220ENST00000541963 CCDC97Q96F63 343 aaPredicted RBP8.82□□□□□ -1
CPSF7-220ENST00000541963 TBC1D2BQ9UPU7 963 aa8.82□□□□□ -1
CPSF7-220ENST00000541963 RUSC2Q8N2Y8 1516 aa8.81□□□□□ -1
CPSF7-220ENST00000541963 WASHC4Q2M389 1173 aa8.81□□□□□ -1
CPSF7-220ENST00000541963 BRICD5Q6PL45 260 aa8.81□□□□□ -1
CPSF7-220ENST00000541963 LRRN4Q8WUT4 740 aa8.81□□□□□ -1
CPSF7-220ENST00000541963 WBP1LQ9NX94 342 aa8.81□□□□□ -1
CPSF7-220ENST00000541963 SERPINA10Q9UK55 444 aa8.81□□□□□ -1
CPSF7-220ENST00000541963 THSD4Q6ZMP0 1018 aa8.8□□□□□ -1
CPSF7-220ENST00000541963 C1orf115Q9H7X2 142 aa8.8□□□□□ -1
CPSF7-220ENST00000541963 CARMIL2Q6F5E8 1435 aa8.8□□□□□ -1
CPSF7-220ENST00000541963 BLOC1S3Q6QNY0 202 aa8.79□□□□□ -1
CPSF7-220ENST00000541963 FAM9AQ8IZU1 332 aaPredicted RBP8.79□□□□□ -1
CPSF7-220ENST00000541963 GJD4Q96KN9 370 aaPredicted RBP8.79□□□□□ -1
CPSF7-220ENST00000541963 KRTAP3-3Q9BYR6 98 aa8.79□□□□□ -1
CPSF7-220ENST00000541963 KRTAP3-2Q9BYR7 98 aa8.79□□□□□ -1
CPSF7-220ENST00000541963 EEA1Q15075 1411 aa8.79□□□□□ -1
CPSF7-220ENST00000541963 ERCC6L2Q5T890 1561 aa8.78□□□□□ -1
CPSF7-220ENST00000541963 RNF19BQ6ZMZ0 732 aa8.78□□□□□ -1
CPSF7-220ENST00000541963 CCDC82Q8N4S0 544 aa8.78□□□□□ -1
CPSF7-220ENST00000541963 HMX1Q9NP08 348 aaPredicted RBP8.78□□□□□ -1
CPSF7-220ENST00000541963 COPS2P61201 443 aa8.77□□□□□ -1.01
CPSF7-220ENST00000541963 LYPD8Q6UX82 237 aa8.77□□□□□ -1.01
CPSF7-220ENST00000541963 CDAN1Q8IWY9 1227 aa8.76□□□□□ -1.01
CPSF7-220ENST00000541963 CALR3Q96L12 384 aaKnown RBP8.76□□□□□ -1.01
CPSF7-220ENST00000541963 SPSB2Q99619 263 aa8.76□□□□□ -1.01
CPSF7-220ENST00000541963 IQGAP2Q13576 1575 aa8.76□□□□□ -1.01
CPSF7-220ENST00000541963 TNIKQ9UKE5 1360 aa8.75□□□□□ -1.01
CPSF7-220ENST00000541963 PTPRGP23470 1445 aa8.75□□□□□ -1.01
CPSF7-220ENST00000541963 PER1O15534 1290 aaPredicted RBP8.75□□□□□ -1.01
CPSF7-220ENST00000541963 JUNDP17535 347 aa8.75□□□□□ -1.01
CPSF7-220ENST00000541963 PTPN5P54829 565 aa8.75□□□□□ -1.01
CPSF7-220ENST00000541963 NR6A1Q15406 480 aa8.75□□□□□ -1.01
CPSF7-220ENST00000541963 TRIM34Q9BYJ4 488 aa8.75□□□□□ -1.01
CPSF7-220ENST00000541963 PRXQ9BXM0 1461 aa8.75□□□□□ -1.01
CPSF7-220ENST00000541963 TTBK1Q5TCY1 1321 aaPredicted RBP8.75□□□□□ -1.01
CPSF7-220ENST00000541963 THAP11Q96EK4 314 aa8.74□□□□□ -1.01
CPSF7-220ENST00000541963 PLSCR2Q9NRY7 297 aa8.74□□□□□ -1.01
CPSF7-220ENST00000541963 CTHP32929 405 aa8.73□□□□□ -1.01
CPSF7-220ENST00000541963 PTPRNQ16849 979 aa8.73□□□□□ -1.01
CPSF7-220ENST00000541963 MSS51Q4VC12 460 aa8.73□□□□□ -1.01
CPSF7-220ENST00000541963 POTEGQ6S5H5 508 aa8.73□□□□□ -1.01
CPSF7-220ENST00000541963 GOLGA3Q08378 1498 aa8.71□□□□□ -1.01
CPSF7-220ENST00000541963 UGGT2Q9NYU1 1516 aa8.71□□□□□ -1.01
CPSF7-220ENST00000541963 POTEMA6NI47 508 aa8.71□□□□□ -1.02
CPSF7-220ENST00000541963 ZPR1O75312 459 aa8.71□□□□□ -1.02
CPSF7-220ENST00000541963 IRF5Q13568 498 aa8.71□□□□□ -1.02
CPSF7-220ENST00000541963 ARMC2Q8NEN0 867 aa8.71□□□□□ -1.02
CPSF7-220ENST00000541963 EPS8L1Q8TE68 723 aa8.71□□□□□ -1.02
CPSF7-220ENST00000541963 GLMNQ92990 594 aa8.71□□□□□ -1.02
CPSF7-220ENST00000541963 IL21Q9HBE4 155 aa8.71□□□□□ -1.02
CPSF7-220ENST00000541963 CTTNBP2Q8WZ74 1663 aa8.7□□□□□ -1.02
CPSF7-220ENST00000541963 SOX11P35716 441 aa8.7□□□□□ -1.02
CPSF7-220ENST00000541963 VAC14Q08AM6 782 aa8.7□□□□□ -1.02
CPSF7-220ENST00000541963 HDGFL1Q5TGJ6 251 aa8.7□□□□□ -1.02
CPSF7-220ENST00000541963 POM121CA8CG34 1229 aa8.69□□□□□ -1.02
CPSF7-220ENST00000541963 ADH1BP00325 375 aa8.69□□□□□ -1.02
CPSF7-220ENST00000541963 CCNYL3P0C7X3 344 aa8.69□□□□□ -1.02
CPSF7-220ENST00000541963 EIF4G2P78344 907 aaKnown RBP eCLIP8.69□□□□□ -1.02
CPSF7-220ENST00000541963 SEMA3FQ13275 785 aa8.69□□□□□ -1.02
CPSF7-220ENST00000541963 MTRQ99707 1265 aa8.69□□□□□ -1.02
CPSF7-220ENST00000541963 FKBPLQ9UIM3 349 aa8.69□□□□□ -1.02
CPSF7-220ENST00000541963 MYT1LQ9UL68 1186 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms