RNA–Protein interactions for RNA: ENST00000523952.5

PTPN12-216, Transcript of protein tyrosine phosphatase, non-receptor type 12, human

TSL 4

Gene PTPN12, Length 500 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN12-216	ENST00000523952	FAM83G	A6ND36	823 aa		13.96	□□□□□ -0.17
PTPN12-216	ENST00000523952	YY1	P25490	414 aa		13.96	□□□□□ -0.17
PTPN12-216	ENST00000523952	NUP188	Q5SRE5	1749 aa		13.95	□□□□□ -0.18
PTPN12-216	ENST00000523952	CRYBG1	Q9Y4K1	1723 aa		13.95	□□□□□ -0.18
PTPN12-216	ENST00000523952	FAM182B	Q5T319	152 aa		13.95	□□□□□ -0.18
PTPN12-216	ENST00000523952	PIK3C2G	O75747	1445 aa		13.93	□□□□□ -0.18
PTPN12-216	ENST00000523952	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.93	□□□□□ -0.18
PTPN12-216	ENST00000523952	PMFBP1	Q8TBY8	1022 aa		13.93	□□□□□ -0.18
PTPN12-216	ENST00000523952	GPRASP1	Q5JY77	1395 aa		13.93	□□□□□ -0.18
PTPN12-216	ENST00000523952	DISP2	A7MBM2	1401 aa		13.92	□□□□□ -0.18
PTPN12-216	ENST00000523952	EZH2	Q15910	746 aa	Known RBP	13.92	□□□□□ -0.18
PTPN12-216	ENST00000523952	POGK	Q9P215	609 aa		13.92	□□□□□ -0.18
PTPN12-216	ENST00000523952	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.92	□□□□□ -0.18
PTPN12-216	ENST00000523952	DHX57	Q6P158	1386 aa	Known RBP	13.92	□□□□□ -0.18
PTPN12-216	ENST00000523952	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.91	□□□□□ -0.18
PTPN12-216	ENST00000523952	SPATA31A5	Q5VU36	1347 aa		13.9	□□□□□ -0.18
PTPN12-216	ENST00000523952	SPATA31A7	Q8IWB4	1347 aa		13.9	□□□□□ -0.18
PTPN12-216	ENST00000523952	CHD4	Q14839	1912 aa		13.9	□□□□□ -0.18
PTPN12-216	ENST00000523952	TRIM37	O94972	964 aa		13.9	□□□□□ -0.18
PTPN12-216	ENST00000523952	NBPF8	Q3BBV2	869 aa		13.9	□□□□□ -0.18
PTPN12-216	ENST00000523952	NBPF14	Q5TI25	921 aa		13.9	□□□□□ -0.18
PTPN12-216	ENST00000523952	SIRT1	Q96EB6	747 aa		13.9	□□□□□ -0.18
PTPN12-216	ENST00000523952	SPATA31E1	Q6ZUB1	1445 aa		13.9	□□□□□ -0.19
PTPN12-216	ENST00000523952	ANKAR	Q7Z5J8	1434 aa		13.9	□□□□□ -0.19
PTPN12-216	ENST00000523952	PARD3	Q8TEW0	1356 aa		13.89	□□□□□ -0.19
PTPN12-216	ENST00000523952	PAK3	O75914	559 aa	Predicted RBP	13.89	□□□□□ -0.19
PTPN12-216	ENST00000523952	APBA3	O96018	575 aa		13.89	□□□□□ -0.19
PTPN12-216	ENST00000523952	FAM196A	Q6ZSG2	479 aa		13.89	□□□□□ -0.19
PTPN12-216	ENST00000523952	PRAM1	Q96QH2	718 aa		13.89	□□□□□ -0.19
PTPN12-216	ENST00000523952	PRDM11	Q9NQV5	511 aa		13.89	□□□□□ -0.19
PTPN12-216	ENST00000523952	EIF3A	Q14152	1382 aa	Known RBP	13.87	□□□□□ -0.19
PTPN12-216	ENST00000523952	CAMTA1	Q9Y6Y1	1673 aa		13.87	□□□□□ -0.19
PTPN12-216	ENST00000523952	SBF2	Q86WG5	1849 aa		13.87	□□□□□ -0.19
PTPN12-216	ENST00000523952	PDE3B	Q13370	1112 aa		13.86	□□□□□ -0.19
PTPN12-216	ENST00000523952	NGDN	Q8NEJ9	315 aa	Known RBP	13.86	□□□□□ -0.19
PTPN12-216	ENST00000523952	STRN4	Q9NRL3	753 aa		13.86	□□□□□ -0.19
PTPN12-216	ENST00000523952	DLC1	Q96QB1	1528 aa		13.85	□□□□□ -0.19
PTPN12-216	ENST00000523952	CAMKK2	Q96RR4	588 aa		13.85	□□□□□ -0.19
PTPN12-216	ENST00000523952	CFAP70	Q5T0N1	1121 aa		13.84	□□□□□ -0.19
PTPN12-216	ENST00000523952	C14orf93	Q9H972	538 aa	Known RBP	13.84	□□□□□ -0.19
PTPN12-216	ENST00000523952	SPON1	Q9HCB6	807 aa		13.84	□□□□□ -0.19
PTPN12-216	ENST00000523952	USP35	Q9P2H5	1018 aa		13.84	□□□□□ -0.19
PTPN12-216	ENST00000523952	SPATA31A1	Q5TZJ5	1347 aa		13.84	□□□□□ -0.19
PTPN12-216	ENST00000523952	TULP4	Q9NRJ4	1543 aa		13.84	□□□□□ -0.19
PTPN12-216	ENST00000523952	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.83	□□□□□ -0.19
PTPN12-216	ENST00000523952	AKAP12	Q02952	1782 aa		13.83	□□□□□ -0.19
PTPN12-216	ENST00000523952	RGPD4	Q7Z3J3	1758 aa		13.83	□□□□□ -0.19
PTPN12-216	ENST00000523952	EVA1C	P58658	441 aa		13.83	□□□□□ -0.2
PTPN12-216	ENST00000523952	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.83	□□□□□ -0.2
PTPN12-216	ENST00000523952	ACIN1	Q9UKV3	1341 aa	Known RBP	13.83	□□□□□ -0.2
PTPN12-216	ENST00000523952	PARP4	Q9UKK3	1724 aa	Known RBP	13.82	□□□□□ -0.2
PTPN12-216	ENST00000523952	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.82	□□□□□ -0.2
PTPN12-216	ENST00000523952	CHRNA2	Q15822	529 aa		13.81	□□□□□ -0.2
PTPN12-216	ENST00000523952	KIAA0232	Q92628	1395 aa		13.81	□□□□□ -0.2
PTPN12-216	ENST00000523952	NINL	Q9Y2I6	1382 aa		13.81	□□□□□ -0.2
PTPN12-216	ENST00000523952	KCNQ2	O43526	872 aa		13.8	□□□□□ -0.2
PTPN12-216	ENST00000523952	MPHOSPH9	Q99550	1183 aa		13.8	□□□□□ -0.2
PTPN12-216	ENST00000523952	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.8	□□□□□ -0.2
PTPN12-216	ENST00000523952	KAT6B	Q8WYB5	2073 aa		13.79	□□□□□ -0.2
PTPN12-216	ENST00000523952	ZC3H6	P61129	1189 aa	Known RBP	13.79	□□□□□ -0.2
PTPN12-216	ENST00000523952	TRAK1	Q9UPV9	953 aa		13.79	□□□□□ -0.2
PTPN12-216	ENST00000523952	ATP7B	P35670	1465 aa		13.79	□□□□□ -0.2
PTPN12-216	ENST00000523952	WNK3	Q9BYP7	1800 aa		13.78	□□□□□ -0.2
PTPN12-216	ENST00000523952	NCBP3	Q53F19	620 aa	Known RBP	13.78	□□□□□ -0.2
PTPN12-216	ENST00000523952	CASZ1	Q86V15	1759 aa		13.78	□□□□□ -0.2
PTPN12-216	ENST00000523952	NRK	Q7Z2Y5	1582 aa		13.77	□□□□□ -0.21
PTPN12-216	ENST00000523952	MYOM1	P52179	1685 aa		13.76	□□□□□ -0.21
PTPN12-216	ENST00000523952	SSH2	Q76I76	1423 aa		13.76	□□□□□ -0.21
PTPN12-216	ENST00000523952	WASL	O00401	505 aa	Predicted RBP	13.76	□□□□□ -0.21
PTPN12-216	ENST00000523952	NUTM2G	Q5VZR2	741 aa		13.76	□□□□□ -0.21
PTPN12-216	ENST00000523952	BARGIN	Q6ZT62	677 aa		13.76	□□□□□ -0.21
PTPN12-216	ENST00000523952	TOPAZ1	Q8N9V7	1692 aa		13.75	□□□□□ -0.21
PTPN12-216	ENST00000523952	PRR36	Q9H6K5	1346 aa		13.75	□□□□□ -0.21
PTPN12-216	ENST00000523952	C11orf95	C9JLR9	678 aa	Predicted RBP	13.75	□□□□□ -0.21
PTPN12-216	ENST00000523952	TCP11L2	Q8N4U5	519 aa		13.75	□□□□□ -0.21
PTPN12-216	ENST00000523952	LMO7	Q8WWI1	1683 aa		13.75	□□□□□ -0.21
PTPN12-216	ENST00000523952	ADGRB1	O14514	1584 aa		13.75	□□□□□ -0.21
PTPN12-216	ENST00000523952	RGPD5	Q99666	1765 aa		13.73	□□□□□ -0.21
PTPN12-216	ENST00000523952	LRRC37A3	O60309	1634 aa		13.73	□□□□□ -0.21
PTPN12-216	ENST00000523952	PEAK1	Q9H792	1746 aa		13.73	□□□□□ -0.21
PTPN12-216	ENST00000523952	LARP1	Q6PKG0	1096 aa	Known RBP	13.72	□□□□□ -0.21
PTPN12-216	ENST00000523952	OVOS2	A0A0G2JMS6	1433 aa		13.72	□□□□□ -0.21
PTPN12-216	ENST00000523952	OVOS2	A0A0J9YW53	1432 aa		13.72	□□□□□ -0.21
PTPN12-216	ENST00000523952	OVOS2	Q6IE36	1432 aa		13.72	□□□□□ -0.21
PTPN12-216	ENST00000523952	ZBTB7C	A1YPR0	619 aa		13.71	□□□□□ -0.21
PTPN12-216	ENST00000523952	NUDT16	Q96DE0	195 aa	Known RBP	13.71	□□□□□ -0.21
PTPN12-216	ENST00000523952	THRAP3	Q9Y2W1	955 aa	Known RBP	13.71	□□□□□ -0.21
PTPN12-216	ENST00000523952	SENP3-EIF4A1	A0A087X0R7	540 aa		13.7	□□□□□ -0.22
PTPN12-216	ENST00000523952	ABTB2	Q8N961	1025 aa		13.7	□□□□□ -0.22
PTPN12-216	ENST00000523952	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.7	□□□□□ -0.22
PTPN12-216	ENST00000523952	KDM2A	Q9Y2K7	1162 aa		13.7	□□□□□ -0.22
PTPN12-216	ENST00000523952	CAPN15	O75808	1086 aa		13.68	□□□□□ -0.22
PTPN12-216	ENST00000523952	DSG3	P32926	999 aa		13.68	□□□□□ -0.22
PTPN12-216	ENST00000523952	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.68	□□□□□ -0.22
PTPN12-216	ENST00000523952	CRB1	P82279	1406 aa		13.67	□□□□□ -0.22
PTPN12-216	ENST00000523952	ZBTB7A	O95365	584 aa		13.67	□□□□□ -0.22
PTPN12-216	ENST00000523952	COL5A2	P05997	1499 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN12-216	ENST00000523952	ACE	P12821	1306 aa		13.66	□□□□□ -0.22
PTPN12-216	ENST00000523952	PLSCR1	O15162	318 aa		13.66	□□□□□ -0.22
PTPN12-216	ENST00000523952	DDB1	Q16531	1140 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 82 ms