RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 NINLQ9Y2I6 1382 aa16.12■□□□□ 0.17
NEDD9-215ENST00000514660 FAM196AQ6ZSG2 479 aa16.11■□□□□ 0.17
NEDD9-215ENST00000514660 PDGFDQ9GZP0 370 aaPredicted RBP16.11■□□□□ 0.17
NEDD9-215ENST00000514660 SPON1Q9HCB6 807 aa16.1■□□□□ 0.17
NEDD9-215ENST00000514660 CASZ1Q86V15 1759 aa16.1■□□□□ 0.17
NEDD9-215ENST00000514660 PIK3C2GO75747 1445 aa16.1■□□□□ 0.17
NEDD9-215ENST00000514660 SPATA31E1Q6ZUB1 1445 aa16.1■□□□□ 0.17
NEDD9-215ENST00000514660 SENP3-EIF4A1A0A087X0R7 540 aa16.09■□□□□ 0.17
NEDD9-215ENST00000514660 RGL3Q3MIN7 710 aa16.08■□□□□ 0.16
NEDD9-215ENST00000514660 PPP1R1BQ9UD71 204 aaPredicted RBP16.08■□□□□ 0.16
NEDD9-215ENST00000514660 NRKQ7Z2Y5 1582 aa16.08■□□□□ 0.16
NEDD9-215ENST00000514660 SAFB2Q14151 953 aaKnown RBP eCLIP16.07■□□□□ 0.16
NEDD9-215ENST00000514660 SIRT1Q96EB6 747 aa16.07■□□□□ 0.16
NEDD9-215ENST00000514660 PRR36Q9H6K5 1346 aa16.07■□□□□ 0.16
NEDD9-215ENST00000514660 MYOM1P52179 1685 aa16.06■□□□□ 0.16
NEDD9-215ENST00000514660 CHRNA2Q15822 529 aa16.06■□□□□ 0.16
NEDD9-215ENST00000514660 ANO8Q9HCE9 1232 aaPredicted RBP16.06■□□□□ 0.16
NEDD9-215ENST00000514660 KIAA0232Q92628 1395 aa16.04■□□□□ 0.16
NEDD9-215ENST00000514660 C1QTNF8P60827 252 aa16.04■□□□□ 0.16
NEDD9-215ENST00000514660 NBPF8Q3BBV2 869 aa16.04■□□□□ 0.16
NEDD9-215ENST00000514660 NBPF14Q5TI25 921 aa16.04■□□□□ 0.16
NEDD9-215ENST00000514660 PPARGC1BQ86YN6 1023 aaKnown RBP16.04■□□□□ 0.16
NEDD9-215ENST00000514660 ACIN1Q9UKV3 1341 aaKnown RBP16.03■□□□□ 0.16
NEDD9-215ENST00000514660 PTF1AQ7RTS3 328 aa16.03■□□□□ 0.16
NEDD9-215ENST00000514660 PRAM1Q96QH2 718 aa16.03■□□□□ 0.16
NEDD9-215ENST00000514660 PRDM11Q9NQV5 511 aa16.03■□□□□ 0.16
NEDD9-215ENST00000514660 STRN4Q9NRL3 753 aa16.03■□□□□ 0.16
NEDD9-215ENST00000514660 USP35Q9P2H5 1018 aa16.03■□□□□ 0.16
NEDD9-215ENST00000514660 ANKARQ7Z5J8 1434 aa16.02■□□□□ 0.16
NEDD9-215ENST00000514660 PHRF1Q9P1Y6 1649 aaKnown RBP16.02■□□□□ 0.16
NEDD9-215ENST00000514660 PTGER2P43116 358 aa16.02■□□□□ 0.16
NEDD9-215ENST00000514660 CHD4Q14839 1912 aa16.02■□□□□ 0.15
NEDD9-215ENST00000514660 CFAP70Q5T0N1 1121 aa16.01■□□□□ 0.15
NEDD9-215ENST00000514660 SLC4A1APQ9BWU0 796 aaKnown RBP16.01■□□□□ 0.15
NEDD9-215ENST00000514660 C14orf93Q9H972 538 aaKnown RBP16.01■□□□□ 0.15
NEDD9-215ENST00000514660 PEAK1Q9H792 1746 aa16.01■□□□□ 0.15
NEDD9-215ENST00000514660 ANKRD30BQ9BXX2 1392 aa16■□□□□ 0.15
NEDD9-215ENST00000514660 BARGINQ6ZT62 677 aa16■□□□□ 0.15
NEDD9-215ENST00000514660 SBF2Q86WG5 1849 aa16■□□□□ 0.15
NEDD9-215ENST00000514660 UTRNP46939 3433 aa15.99■□□□□ 0.15
NEDD9-215ENST00000514660 DCAF8L1A6NGE4 600 aa15.98■□□□□ 0.15
NEDD9-215ENST00000514660 ZBTB7AO95365 584 aa15.98■□□□□ 0.15
NEDD9-215ENST00000514660 ZC3H6P61129 1189 aaKnown RBP15.98■□□□□ 0.15
NEDD9-215ENST00000514660 LARP1Q6PKG0 1096 aaKnown RBP15.98■□□□□ 0.15
NEDD9-215ENST00000514660 SSH2Q76I76 1423 aa15.98■□□□□ 0.15
NEDD9-215ENST00000514660 PROM2Q8N271 834 aa15.98■□□□□ 0.15
NEDD9-215ENST00000514660 HIRIP3Q9BW71 556 aaPredicted RBP15.98■□□□□ 0.15
NEDD9-215ENST00000514660 PDE3BQ13370 1112 aa15.97■□□□□ 0.15
NEDD9-215ENST00000514660 GPRASP1Q5JY77 1395 aa15.97■□□□□ 0.15
NEDD9-215ENST00000514660 LMO7Q8WWI1 1683 aa15.96■□□□□ 0.15
NEDD9-215ENST00000514660 RGPD3A6NKT7 1758 aaPredicted RBP15.96■□□□□ 0.15
NEDD9-215ENST00000514660 RGPD4Q7Z3J3 1758 aa15.96■□□□□ 0.15
NEDD9-215ENST00000514660 PARP4Q9UKK3 1724 aaKnown RBP15.96■□□□□ 0.15
NEDD9-215ENST00000514660 DLC1Q96QB1 1528 aa15.95■□□□□ 0.14
NEDD9-215ENST00000514660 NUTM2GQ5VZR2 741 aa15.95■□□□□ 0.14
NEDD9-215ENST00000514660 SYT17Q9BSW7 474 aa15.95■□□□□ 0.14
NEDD9-215ENST00000514660 FHDC1Q9C0D6 1143 aaPredicted RBP15.95■□□□□ 0.14
NEDD9-215ENST00000514660 ATF5Q9Y2D1 282 aaPredicted RBP15.95■□□□□ 0.14
NEDD9-215ENST00000514660 PAK3O75914 559 aaPredicted RBP15.94■□□□□ 0.14
NEDD9-215ENST00000514660 SGIP1Q9BQI5 828 aa15.94■□□□□ 0.14
NEDD9-215ENST00000514660 DHX57Q6P158 1386 aaKnown RBP15.94■□□□□ 0.14
NEDD9-215ENST00000514660 TULP4Q9NRJ4 1543 aa15.94■□□□□ 0.14
NEDD9-215ENST00000514660 ADGRB1O14514 1584 aa15.93■□□□□ 0.14
NEDD9-215ENST00000514660 TCP11L2Q8N4U5 519 aa15.93■□□□□ 0.14
NEDD9-215ENST00000514660 MINK1Q8N4C8 1332 aaPredicted RBP15.93■□□□□ 0.14
NEDD9-215ENST00000514660 PLSCR1O15162 318 aa15.91■□□□□ 0.14
NEDD9-215ENST00000514660 LRRC37A3O60309 1634 aa15.9■□□□□ 0.14
NEDD9-215ENST00000514660 POGKQ9P215 609 aa15.9■□□□□ 0.14
NEDD9-215ENST00000514660 EVA1CP58658 441 aa15.89■□□□□ 0.13
NEDD9-215ENST00000514660 NGDNQ8NEJ9 315 aaKnown RBP15.89■□□□□ 0.13
NEDD9-215ENST00000514660 WASLO00401 505 aaPredicted RBP15.88■□□□□ 0.13
NEDD9-215ENST00000514660 TRAK1Q9UPV9 953 aa15.88■□□□□ 0.13
NEDD9-215ENST00000514660 ATP7BP35670 1465 aa15.88■□□□□ 0.13
NEDD9-215ENST00000514660 CEP350Q5VT06 3117 aa15.87■□□□□ 0.13
NEDD9-215ENST00000514660 OVOS2A0A0G2JMS6 1433 aa15.86■□□□□ 0.13
NEDD9-215ENST00000514660 OVOS2A0A0J9YW53 1432 aa15.86■□□□□ 0.13
NEDD9-215ENST00000514660 OVOS2Q6IE36 1432 aa15.86■□□□□ 0.13
NEDD9-215ENST00000514660 COL5A2P05997 1499 aaPredicted RBP15.86■□□□□ 0.13
NEDD9-215ENST00000514660 SHANK3Q9BYB0 1731 aa15.86■□□□□ 0.13
NEDD9-215ENST00000514660 BCL11BQ9C0K0 894 aaPredicted RBP15.85■□□□□ 0.13
NEDD9-215ENST00000514660 CPDO75976 1380 aa15.85■□□□□ 0.13
NEDD9-215ENST00000514660 MARCH10Q8NA82 808 aaPredicted RBP15.83■□□□□ 0.12
NEDD9-215ENST00000514660 MPHOSPH9Q99550 1183 aa15.83■□□□□ 0.12
NEDD9-215ENST00000514660 THRAP3Q9Y2W1 955 aaKnown RBP15.83■□□□□ 0.12
NEDD9-215ENST00000514660 USP19O94966 1318 aa15.83■□□□□ 0.12
NEDD9-215ENST00000514660 ITSN1Q15811 1721 aa15.82■□□□□ 0.12
NEDD9-215ENST00000514660 WNK3Q9BYP7 1800 aa15.82■□□□□ 0.12
NEDD9-215ENST00000514660 SLC15A2Q16348 729 aa15.82■□□□□ 0.12
NEDD9-215ENST00000514660 TXNRD1Q16881 649 aa15.82■□□□□ 0.12
NEDD9-215ENST00000514660 NUDT16Q96DE0 195 aaKnown RBP15.82■□□□□ 0.12
NEDD9-215ENST00000514660 TOPAZ1Q8N9V7 1692 aa15.82■□□□□ 0.12
NEDD9-215ENST00000514660 GIGYF1O75420 1035 aaPredicted RBP15.81■□□□□ 0.12
NEDD9-215ENST00000514660 MTFR1LQ9H019 292 aa15.81■□□□□ 0.12
NEDD9-215ENST00000514660 CRB1P82279 1406 aa15.8■□□□□ 0.12
NEDD9-215ENST00000514660 POLR3AO14802 1390 aaPredicted RBP15.8■□□□□ 0.12
NEDD9-215ENST00000514660 EIF3AQ14152 1382 aaKnown RBP15.8■□□□□ 0.12
NEDD9-215ENST00000514660 PAPPAQ13219 1627 aa15.79■□□□□ 0.12
NEDD9-215ENST00000514660 MAP3K5Q99683 1374 aa15.79■□□□□ 0.12
NEDD9-215ENST00000514660 ACEP12821 1306 aa15.79■□□□□ 0.12
NEDD9-215ENST00000514660 COL18A1P39060 1754 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms