RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 PDCL2Q8N4E4 241 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 SMARCC1Q92922 1105 aaPredicted RBP6.91□□□□□ -1.3
USF3-204ENST00000496826 ATP6V1E2Q96A05 226 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 TAOK2Q9UL54 1235 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 SPAG9O60271 1321 aaKnown RBP6.91□□□□□ -1.3
USF3-204ENST00000496826 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.91□□□□□ -1.3
USF3-204ENST00000496826 FEZ2Q9UHY8 353 aaPredicted RBP6.91□□□□□ -1.3
USF3-204ENST00000496826 BZW2Q9Y6E2 419 aaKnown RBP6.91□□□□□ -1.3
USF3-204ENST00000496826 PSPC1Q8WXF1 523 aaKnown RBP6.91□□□□□ -1.3
USF3-204ENST00000496826 HAUS2Q9NVX0 235 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 SH2D4BQ5SQS7 431 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 SASS6Q6UVJ0 657 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 ZFYVE1Q9HBF4 777 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 RAI14Q9P0K7 980 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 FAM184AQ8NB25 1140 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 STMN2Q93045 179 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 EIF2AQ9BY44 585 aaKnown RBP6.9□□□□□ -1.3
USF3-204ENST00000496826 COMMD10Q9Y6G5 202 aa6.9□□□□□ -1.3
USF3-204ENST00000496826 MVPQ14764 893 aaKnown RBP6.9□□□□□ -1.3
USF3-204ENST00000496826 TACC1O75410 805 aa6.9□□□□□ -1.3
USF3-204ENST00000496826 GTF2F1P35269 517 aaKnown RBP eCLIP6.9□□□□□ -1.3
USF3-204ENST00000496826 PSMA4P25789 261 aaKnown RBP6.9□□□□□ -1.31
USF3-204ENST00000496826 MATR3P43243 847 aaKnown RBP eCLIP6.9□□□□□ -1.31
USF3-204ENST00000496826 KIAA1328Q86T90 577 aa6.9□□□□□ -1.31
USF3-204ENST00000496826 KLHL34Q8N239 644 aa6.9□□□□□ -1.31
USF3-204ENST00000496826 RASSF4Q9H2L5 321 aa6.9□□□□□ -1.31
USF3-204ENST00000496826 PLCD3Q8N3E9 789 aa6.9□□□□□ -1.31
USF3-204ENST00000496826 ZC4H2Q9NQZ6 224 aa6.9□□□□□ -1.31
USF3-204ENST00000496826 RBM33Q96EV2 1170 aaKnown RBP6.89□□□□□ -1.31
USF3-204ENST00000496826 MAGEC2Q9UBF1 373 aaPredicted RBP6.89□□□□□ -1.31
USF3-204ENST00000496826 USO1O60763 962 aaKnown RBP6.89□□□□□ -1.31
USF3-204ENST00000496826 LRRCC1Q9C099 1032 aa6.89□□□□□ -1.31
USF3-204ENST00000496826 IQCGQ9H095 443 aaKnown RBP6.89□□□□□ -1.31
USF3-204ENST00000496826 ZMAT2Q96NC0 199 aaKnown RBP6.89□□□□□ -1.31
USF3-204ENST00000496826 KRT83P78385 493 aa6.89□□□□□ -1.31
USF3-204ENST00000496826 CCDC158Q5M9N0 1113 aa6.89□□□□□ -1.31
USF3-204ENST00000496826 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.89□□□□□ -1.31
USF3-204ENST00000496826 STIM1Q13586 685 aa6.89□□□□□ -1.31
USF3-204ENST00000496826 CCDC150Q8NCX0 1101 aa6.89□□□□□ -1.31
USF3-204ENST00000496826 SRCIN1Q9C0H9 1055 aa6.89□□□□□ -1.31
USF3-204ENST00000496826 TAF7Q15545 349 aaPredicted RBP6.89□□□□□ -1.31
USF3-204ENST00000496826 MAP9Q49MG5 647 aa6.89□□□□□ -1.31
USF3-204ENST00000496826 ANLNQ9NQW6 1124 aa6.89□□□□□ -1.31
USF3-204ENST00000496826 MAP2K1Q02750 393 aaPredicted RBP6.89□□□□□ -1.31
USF3-204ENST00000496826 PATL1Q86TB9 770 aaKnown RBP6.89□□□□□ -1.31
USF3-204ENST00000496826 GABPB2Q8TAK5 448 aaPredicted RBP6.89□□□□□ -1.31
USF3-204ENST00000496826 ZNF622Q969S3 477 aaKnown RBP eCLIP6.89□□□□□ -1.31
USF3-204ENST00000496826 CFAP36Q96G28 342 aa6.89□□□□□ -1.31
USF3-204ENST00000496826 ZFYP08048 801 aaPredicted RBP6.88□□□□□ -1.31
USF3-204ENST00000496826 EIF2S2P20042 333 aaKnown RBP6.88□□□□□ -1.31
USF3-204ENST00000496826 C10orf67Q8IYJ2 551 aa6.88□□□□□ -1.31
USF3-204ENST00000496826 SLC3A2P08195 630 aaKnown RBP6.88□□□□□ -1.31
USF3-204ENST00000496826 ARID4AP29374 1257 aaPredicted RBP6.88□□□□□ -1.31
USF3-204ENST00000496826 TRDNQ13061 729 aa6.88□□□□□ -1.31
USF3-204ENST00000496826 EP400NLQ6ZTU2 488 aa6.88□□□□□ -1.31
USF3-204ENST00000496826 CACTINQ8WUQ7 758 aaKnown RBP6.88□□□□□ -1.31
USF3-204ENST00000496826 CEP83Q9Y592 693 aa6.88□□□□□ -1.31
USF3-204ENST00000496826 MRPS9P82933 396 aaKnown RBP6.88□□□□□ -1.31
USF3-204ENST00000496826 FBXW7Q969H0 707 aa6.88□□□□□ -1.31
USF3-204ENST00000496826 DHX16O60231 1041 aaKnown RBP6.88□□□□□ -1.31
USF3-204ENST00000496826 TMC2Q8TDI7 906 aa6.88□□□□□ -1.31
USF3-204ENST00000496826 ZBTB24O43167 697 aaPredicted RBP6.87□□□□□ -1.31
USF3-204ENST00000496826 ERMNQ8TAM6 284 aa6.87□□□□□ -1.31
USF3-204ENST00000496826 VCXQ9H320 206 aa6.87□□□□□ -1.31
USF3-204ENST00000496826 RNF8O76064 485 aa6.87□□□□□ -1.31
USF3-204ENST00000496826 PPP4R3AQ6IN85 833 aa6.87□□□□□ -1.31
USF3-204ENST00000496826 TRIM22Q8IYM9 498 aa6.87□□□□□ -1.31
USF3-204ENST00000496826 HAUS8Q9BT25 410 aa6.87□□□□□ -1.31
USF3-204ENST00000496826 KHDRBS2Q5VWX1 349 aaKnown RBP6.87□□□□□ -1.31
USF3-204ENST00000496826 SPECC1LQ69YQ0 1117 aa6.87□□□□□ -1.31
USF3-204ENST00000496826 DNAJC8O75937 253 aaPredicted RBP6.87□□□□□ -1.31
USF3-204ENST00000496826 CASTP20810 708 aaKnown RBP6.87□□□□□ -1.31
USF3-204ENST00000496826 RBM25P49756 843 aaKnown RBP6.87□□□□□ -1.31
USF3-204ENST00000496826 TRIM60Q495X7 471 aa6.87□□□□□ -1.31
USF3-204ENST00000496826 AIMP1Q12904 312 aaKnown RBP6.87□□□□□ -1.31
USF3-204ENST00000496826 DNAJC21Q5F1R6 531 aaKnown RBP6.87□□□□□ -1.31
USF3-204ENST00000496826 SDCCAG8Q86SQ7 713 aaPredicted RBP6.87□□□□□ -1.31
USF3-204ENST00000496826 SEC62Q99442 399 aaKnown RBP6.87□□□□□ -1.31
USF3-204ENST00000496826 LIMCH1Q9UPQ0 1083 aa6.87□□□□□ -1.31
USF3-204ENST00000496826 HOXC8P31273 242 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 LMOD3Q0VAK6 560 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 DACH1Q9UI36 760 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 RIOK3O14730 519 aaKnown RBP6.86□□□□□ -1.31
USF3-204ENST00000496826 SPATA32Q96LK8 384 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 SATB1Q01826 763 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 ODF2LQ9ULJ1 636 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 DAAM1Q9Y4D1 1078 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 HSP90AA5PQ58FG0 334 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 CACNA2D3Q8IZS8 1091 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 ATRIPQ8WXE1 791 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 A0A1B0GW55 424 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 DUX4L2P0CJ85 424 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 DUX4L3P0CJ86 424 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 DUX4L4P0CJ87 422 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 DUX4L5P0CJ88 424 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 DUX4L6P0CJ89 424 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 DUX4L7P0CJ90 424 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 BICD1Q96G01 975 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 DUX4Q9UBX2 424 aa6.86□□□□□ -1.31
USF3-204ENST00000496826 CEBPZQ03701 1054 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms