RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 ERBB3P21860 1342 aa5.45□□□□□ -1.54
BRCA1-220ENST00000492859 RPGRIP1LQ68CZ1 1315 aa5.45□□□□□ -1.54
BRCA1-220ENST00000492859 ZRANB2O95218 330 aaKnown RBP eCLIP5.45□□□□□ -1.54
BRCA1-220ENST00000492859 DSG2Q14126 1118 aa5.45□□□□□ -1.54
BRCA1-220ENST00000492859 SETDB1Q15047 1291 aa5.45□□□□□ -1.54
BRCA1-220ENST00000492859 HSP90AB2PQ58FF8 381 aa5.45□□□□□ -1.54
BRCA1-220ENST00000492859 OTUD6BQ8N6M0 293 aa5.45□□□□□ -1.54
BRCA1-220ENST00000492859 HELBQ8NG08 1087 aaPredicted RBP5.45□□□□□ -1.54
BRCA1-220ENST00000492859 KCNB2Q92953 911 aa5.45□□□□□ -1.54
BRCA1-220ENST00000492859 MKL1Q969V6 931 aa5.45□□□□□ -1.54
BRCA1-220ENST00000492859 SPACA7Q96KW9 195 aa5.45□□□□□ -1.54
BRCA1-220ENST00000492859 RYDENQ9NUL5 291 aaKnown RBP5.45□□□□□ -1.54
BRCA1-220ENST00000492859 TMA7Q9Y2S6 64 aaKnown RBP5.45□□□□□ -1.54
BRCA1-220ENST00000492859 NCKAP5LQ9HCH0 1330 aa5.45□□□□□ -1.54
BRCA1-220ENST00000492859 TLDC2A0PJX2 215 aa5.44□□□□□ -1.54
BRCA1-220ENST00000492859 SCP2P22307 547 aa5.44□□□□□ -1.54
BRCA1-220ENST00000492859 VARS2Q5ST30 1063 aaKnown RBP5.44□□□□□ -1.54
BRCA1-220ENST00000492859 CREBRFQ8IUR6 639 aa5.44□□□□□ -1.54
BRCA1-220ENST00000492859 EGFL6Q8IUX8 553 aa5.44□□□□□ -1.54
BRCA1-220ENST00000492859 GPIHBP1Q8IV16 184 aa5.44□□□□□ -1.54
BRCA1-220ENST00000492859 TMC2Q8TDI7 906 aa5.44□□□□□ -1.54
BRCA1-220ENST00000492859 PNISRQ8TF01 805 aaKnown RBP5.44□□□□□ -1.54
BRCA1-220ENST00000492859 TBC1D2Q9BYX2 928 aa5.44□□□□□ -1.54
BRCA1-220ENST00000492859 LNPKQ9C0E8 428 aa5.44□□□□□ -1.54
BRCA1-220ENST00000492859 NRBP1Q9UHY1 535 aa5.44□□□□□ -1.54
BRCA1-220ENST00000492859 FBXO9Q9UK97 447 aaPredicted RBP5.44□□□□□ -1.54
BRCA1-220ENST00000492859 IGF1RP08069 1367 aa5.43□□□□□ -1.54
BRCA1-220ENST00000492859 CFAP69A5D8W1 941 aa5.43□□□□□ -1.54
BRCA1-220ENST00000492859 STK10O94804 968 aaKnown RBP5.43□□□□□ -1.54
BRCA1-220ENST00000492859 NUDT7P0C024 238 aa5.43□□□□□ -1.54
BRCA1-220ENST00000492859 COPB2P35606 906 aa5.43□□□□□ -1.54
BRCA1-220ENST00000492859 SEMA3FQ13275 785 aa5.43□□□□□ -1.54
BRCA1-220ENST00000492859 E2F4Q16254 413 aa5.43□□□□□ -1.54
BRCA1-220ENST00000492859 NBPF9Q3BBW0 867 aa5.43□□□□□ -1.54
BRCA1-220ENST00000492859 DDX46Q7L014 1031 aaKnown RBP5.43□□□□□ -1.54
BRCA1-220ENST00000492859 PBXIP1Q96AQ6 731 aa5.43□□□□□ -1.54
BRCA1-220ENST00000492859 TRIM44Q96DX7 344 aaPredicted RBP5.43□□□□□ -1.54
BRCA1-220ENST00000492859 SENP7Q9BQF6 1050 aa5.43□□□□□ -1.54
BRCA1-220ENST00000492859 FRMD4BQ9Y2L6 1034 aa5.43□□□□□ -1.54
BRCA1-220ENST00000492859 CSB-PGBD3P0DP91 1061 aa5.42□□□□□ -1.54
BRCA1-220ENST00000492859 HDAC1Q13547 482 aaPredicted RBP5.42□□□□□ -1.54
BRCA1-220ENST00000492859 CCDC184Q52MB2 194 aa5.42□□□□□ -1.54
BRCA1-220ENST00000492859 PLPP6Q8IY26 295 aa5.42□□□□□ -1.54
BRCA1-220ENST00000492859 PCMTD1Q96MG8 357 aaPredicted RBP5.42□□□□□ -1.54
BRCA1-220ENST00000492859 BCL2L13Q9BXK5 485 aa5.42□□□□□ -1.54
BRCA1-220ENST00000492859 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.42□□□□□ -1.54
BRCA1-220ENST00000492859 SDE2Q6IQ49 451 aa5.42□□□□□ -1.54
BRCA1-220ENST00000492859 CCDC146Q8IYE0 955 aa5.42□□□□□ -1.54
BRCA1-220ENST00000492859 MSL3Q8N5Y2 521 aaKnown RBP5.42□□□□□ -1.54
BRCA1-220ENST00000492859 GIPC2Q8TF65 315 aa5.42□□□□□ -1.54
BRCA1-220ENST00000492859 CARD10Q9BWT7 1032 aa5.42□□□□□ -1.54
BRCA1-220ENST00000492859 GPHNQ9NQX3 736 aaPredicted RBP5.42□□□□□ -1.54
BRCA1-220ENST00000492859 WWC3Q9ULE0 1092 aa5.42□□□□□ -1.54
BRCA1-220ENST00000492859 GNEQ9Y223 722 aaKnown RBP5.42□□□□□ -1.54
BRCA1-220ENST00000492859 PCDHGA4Q9Y5G9 962 aa5.42□□□□□ -1.54
BRCA1-220ENST00000492859 CCDC189A1A4V9 331 aa5.41□□□□□ -1.54
BRCA1-220ENST00000492859 APPP05067 770 aa5.41□□□□□ -1.54
BRCA1-220ENST00000492859 EVA1CP58658 441 aa5.41□□□□□ -1.54
BRCA1-220ENST00000492859 PARP9Q8IXQ6 854 aa5.41□□□□□ -1.54
BRCA1-220ENST00000492859 ATL2Q8NHH9 583 aa5.41□□□□□ -1.54
BRCA1-220ENST00000492859 ANP32BQ92688 251 aaKnown RBP5.41□□□□□ -1.54
BRCA1-220ENST00000492859 SCYL1Q96KG9 808 aa5.41□□□□□ -1.54
BRCA1-220ENST00000492859 CALR3Q96L12 384 aaKnown RBP5.41□□□□□ -1.54
BRCA1-220ENST00000492859 ZNF830Q96NB3 372 aaPredicted RBP5.41□□□□□ -1.54
BRCA1-220ENST00000492859 CRISPLD2Q9H0B8 497 aa5.41□□□□□ -1.54
BRCA1-220ENST00000492859 TMX4Q9H1E5 349 aaPredicted RBP5.41□□□□□ -1.54
BRCA1-220ENST00000492859 VRTNQ9H8Y1 702 aa5.41□□□□□ -1.54
BRCA1-220ENST00000492859 SWAP70Q9UH65 585 aa5.41□□□□□ -1.54
BRCA1-220ENST00000492859 FEZ2Q9UHY8 353 aaPredicted RBP5.41□□□□□ -1.54
BRCA1-220ENST00000492859 TPX2Q9ULW0 747 aaKnown RBP5.41□□□□□ -1.54
BRCA1-220ENST00000492859 KAT6BQ8WYB5 2073 aa5.41□□□□□ -1.54
BRCA1-220ENST00000492859 RIMBP2O15034 1052 aa5.4□□□□□ -1.55
BRCA1-220ENST00000492859 RRP9O43818 475 aaKnown RBP5.4□□□□□ -1.55
BRCA1-220ENST00000492859 SRPK2P78362 688 aaKnown RBP5.4□□□□□ -1.55
BRCA1-220ENST00000492859 IRX3P78415 501 aaPredicted RBP5.4□□□□□ -1.55
BRCA1-220ENST00000492859 FOXK1P85037 733 aa5.4□□□□□ -1.55
BRCA1-220ENST00000492859 PUS10Q3MIT2 529 aaKnown RBP5.4□□□□□ -1.55
BRCA1-220ENST00000492859 POTEEQ6S8J3 1075 aa5.4□□□□□ -1.55
BRCA1-220ENST00000492859 NLGN1Q8N2Q7 840 aa5.4□□□□□ -1.55
BRCA1-220ENST00000492859 LHX6Q9UPM6 363 aa5.4□□□□□ -1.55
BRCA1-220ENST00000492859 TBX22Q9Y458 520 aa5.4□□□□□ -1.55
BRCA1-220ENST00000492859 IRF6O14896 467 aa5.39□□□□□ -1.55
BRCA1-220ENST00000492859 HOXA2O43364 376 aa5.39□□□□□ -1.55
BRCA1-220ENST00000492859 BIRC2Q13490 618 aa5.39□□□□□ -1.55
BRCA1-220ENST00000492859 ICE2Q659A1 982 aa5.39□□□□□ -1.55
BRCA1-220ENST00000492859 NPAS4Q8IUM7 802 aa5.39□□□□□ -1.55
BRCA1-220ENST00000492859 RPS6KC1Q96S38 1066 aa5.39□□□□□ -1.55
BRCA1-220ENST00000492859 IRF2BPLQ9H1B7 796 aa5.39□□□□□ -1.55
BRCA1-220ENST00000492859 QTRT2Q9H974 415 aaKnown RBP5.39□□□□□ -1.55
BRCA1-220ENST00000492859 ZSWIM6Q9HCJ5 1215 aa5.39□□□□□ -1.55
BRCA1-220ENST00000492859 BSDC1Q9NW68 430 aaPredicted RBP5.39□□□□□ -1.55
BRCA1-220ENST00000492859 MAP3K20Q9NYL2 800 aaKnown RBP5.39□□□□□ -1.55
BRCA1-220ENST00000492859 PRR12Q9ULL5 1215 aa5.39□□□□□ -1.55
BRCA1-220ENST00000492859 NOP58Q9Y2X3 529 aaKnown RBP5.39□□□□□ -1.55
BRCA1-220ENST00000492859 KDM4FA0A1W2PPD8 638 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 VAMP1P23763 118 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 TBX4P57082 545 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 LMOD3Q0VAK6 560 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 PLEKHG6Q3KR16 790 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 CCAR1Q8IX12 1150 aaKnown RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms