RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 SAFB2Q14151 953 aaKnown RBP eCLIP9.65□□□□□ -0.86
PTCH1-211ENST00000488809 PMFBP1Q8TBY8 1022 aa9.65□□□□□ -0.86
PTCH1-211ENST00000488809 TULP4Q9NRJ4 1543 aa9.65□□□□□ -0.86
PTCH1-211ENST00000488809 PARD3Q8TEW0 1356 aa9.64□□□□□ -0.87
PTCH1-211ENST00000488809 PHRF1Q9P1Y6 1649 aaKnown RBP9.64□□□□□ -0.87
PTCH1-211ENST00000488809 CFAP70Q5T0N1 1121 aa9.64□□□□□ -0.87
PTCH1-211ENST00000488809 SPATA31A5Q5VU36 1347 aa9.63□□□□□ -0.87
PTCH1-211ENST00000488809 SPATA31A7Q8IWB4 1347 aa9.63□□□□□ -0.87
PTCH1-211ENST00000488809 R3HDM1Q15032 1099 aaKnown RBP9.63□□□□□ -0.87
PTCH1-211ENST00000488809 PRDM11Q9NQV5 511 aa9.63□□□□□ -0.87
PTCH1-211ENST00000488809 RREB1Q92766 1687 aa9.63□□□□□ -0.87
PTCH1-211ENST00000488809 ATP7BP35670 1465 aa9.62□□□□□ -0.87
PTCH1-211ENST00000488809 PAK3O75914 559 aaPredicted RBP9.62□□□□□ -0.87
PTCH1-211ENST00000488809 FAM196AQ6ZSG2 479 aa9.62□□□□□ -0.87
PTCH1-211ENST00000488809 NUP188Q5SRE5 1749 aa9.62□□□□□ -0.87
PTCH1-211ENST00000488809 NGDNQ8NEJ9 315 aaKnown RBP9.61□□□□□ -0.87
PTCH1-211ENST00000488809 ADGRB1O14514 1584 aa9.61□□□□□ -0.87
PTCH1-211ENST00000488809 ARHGEF28Q8N1W1 1705 aaKnown RBP9.6□□□□□ -0.87
PTCH1-211ENST00000488809 DCAF8L1A6NGE4 600 aa9.6□□□□□ -0.87
PTCH1-211ENST00000488809 EZH2Q15910 746 aaKnown RBP9.6□□□□□ -0.87
PTCH1-211ENST00000488809 NBPF8Q3BBV2 869 aa9.6□□□□□ -0.87
PTCH1-211ENST00000488809 NBPF14Q5TI25 921 aa9.6□□□□□ -0.87
PTCH1-211ENST00000488809 TRAK1Q9UPV9 953 aa9.6□□□□□ -0.87
PTCH1-211ENST00000488809 SPATA31A1Q5TZJ5 1347 aa9.59□□□□□ -0.87
PTCH1-211ENST00000488809 MINK1Q8N4C8 1332 aaPredicted RBP9.59□□□□□ -0.87
PTCH1-211ENST00000488809 WASLO00401 505 aaPredicted RBP9.59□□□□□ -0.87
PTCH1-211ENST00000488809 TRIM37O94972 964 aa9.59□□□□□ -0.87
PTCH1-211ENST00000488809 APBA3O96018 575 aa9.59□□□□□ -0.87
PTCH1-211ENST00000488809 PDE3BQ13370 1112 aa9.59□□□□□ -0.87
PTCH1-211ENST00000488809 FAM182BQ5T319 152 aa9.59□□□□□ -0.87
PTCH1-211ENST00000488809 HIRIP3Q9BW71 556 aaPredicted RBP9.59□□□□□ -0.87
PTCH1-211ENST00000488809 RGPD3A6NKT7 1758 aaPredicted RBP9.58□□□□□ -0.88
PTCH1-211ENST00000488809 RGPD4Q7Z3J3 1758 aa9.58□□□□□ -0.88
PTCH1-211ENST00000488809 C11orf95C9JLR9 678 aaPredicted RBP9.58□□□□□ -0.88
PTCH1-211ENST00000488809 STAC3Q96MF2 364 aa9.58□□□□□ -0.88
PTCH1-211ENST00000488809 CAMKK2Q96RR4 588 aa9.58□□□□□ -0.88
PTCH1-211ENST00000488809 STRN4Q9NRL3 753 aa9.58□□□□□ -0.88
PTCH1-211ENST00000488809 PARP4Q9UKK3 1724 aaKnown RBP9.58□□□□□ -0.88
PTCH1-211ENST00000488809 KIAA0232Q92628 1395 aa9.58□□□□□ -0.88
PTCH1-211ENST00000488809 TOPAZ1Q8N9V7 1692 aa9.58□□□□□ -0.88
PTCH1-211ENST00000488809 YY1P25490 414 aa9.57□□□□□ -0.88
PTCH1-211ENST00000488809 EVA1CP58658 441 aa9.57□□□□□ -0.88
PTCH1-211ENST00000488809 PPP1R1BQ9UD71 204 aaPredicted RBP9.57□□□□□ -0.88
PTCH1-211ENST00000488809 PRR36Q9H6K5 1346 aa9.56□□□□□ -0.88
PTCH1-211ENST00000488809 NRKQ7Z2Y5 1582 aa9.56□□□□□ -0.88
PTCH1-211ENST00000488809 BARGINQ6ZT62 677 aa9.56□□□□□ -0.88
PTCH1-211ENST00000488809 USP35Q9P2H5 1018 aa9.56□□□□□ -0.88
PTCH1-211ENST00000488809 SBF2Q86WG5 1849 aa9.56□□□□□ -0.88
PTCH1-211ENST00000488809 SSH2Q76I76 1423 aa9.56□□□□□ -0.88
PTCH1-211ENST00000488809 NINLQ9Y2I6 1382 aa9.55□□□□□ -0.88
PTCH1-211ENST00000488809 CHRNA2Q15822 529 aa9.55□□□□□ -0.88
PTCH1-211ENST00000488809 THRAP3Q9Y2W1 955 aaKnown RBP9.55□□□□□ -0.88
PTCH1-211ENST00000488809 AKAP12Q02952 1782 aa9.55□□□□□ -0.88
PTCH1-211ENST00000488809 LMO7Q8WWI1 1683 aa9.55□□□□□ -0.88
PTCH1-211ENST00000488809 KIAA1210Q9ULL0 1709 aa9.54□□□□□ -0.88
PTCH1-211ENST00000488809 ZC3H6P61129 1189 aaKnown RBP9.54□□□□□ -0.88
PTCH1-211ENST00000488809 TCP11L2Q8N4U5 519 aa9.54□□□□□ -0.88
PTCH1-211ENST00000488809 NUDT16Q96DE0 195 aaKnown RBP9.54□□□□□ -0.88
PTCH1-211ENST00000488809 SPON1Q9HCB6 807 aa9.54□□□□□ -0.88
PTCH1-211ENST00000488809 CPDO75976 1380 aa9.53□□□□□ -0.88
PTCH1-211ENST00000488809 DCAF11Q8TEB1 546 aa9.53□□□□□ -0.88
PTCH1-211ENST00000488809 KDM2AQ9Y2K7 1162 aa9.53□□□□□ -0.88
PTCH1-211ENST00000488809 WNK3Q9BYP7 1800 aa9.53□□□□□ -0.88
PTCH1-211ENST00000488809 POLR3AO14802 1390 aaPredicted RBP9.52□□□□□ -0.88
PTCH1-211ENST00000488809 CAMTA1Q9Y6Y1 1673 aa9.52□□□□□ -0.89
PTCH1-211ENST00000488809 OVOS2A0A0G2JMS6 1433 aa9.52□□□□□ -0.89
PTCH1-211ENST00000488809 OVOS2A0A0J9YW53 1432 aa9.52□□□□□ -0.89
PTCH1-211ENST00000488809 KCNQ2O43526 872 aa9.52□□□□□ -0.89
PTCH1-211ENST00000488809 OVOS2Q6IE36 1432 aa9.52□□□□□ -0.89
PTCH1-211ENST00000488809 ABTB2Q8N961 1025 aa9.52□□□□□ -0.89
PTCH1-211ENST00000488809 CHD4Q14839 1912 aa9.52□□□□□ -0.89
PTCH1-211ENST00000488809 NUTM2GQ5VZR2 741 aa9.51□□□□□ -0.89
PTCH1-211ENST00000488809 NLRP13Q86W25 1043 aa9.51□□□□□ -0.89
PTCH1-211ENST00000488809 CCDC61Q9Y6R9 512 aa9.51□□□□□ -0.89
PTCH1-211ENST00000488809 LRRC37A3O60309 1634 aa9.51□□□□□ -0.89
PTCH1-211ENST00000488809 ACEP12821 1306 aa9.51□□□□□ -0.89
PTCH1-211ENST00000488809 PEAK1Q9H792 1746 aa9.51□□□□□ -0.89
PTCH1-211ENST00000488809 BRD4O60885 1362 aaPredicted RBP9.5□□□□□ -0.89
PTCH1-211ENST00000488809 CRB1P82279 1406 aa9.5□□□□□ -0.89
PTCH1-211ENST00000488809 LARP1Q6PKG0 1096 aaKnown RBP9.5□□□□□ -0.89
PTCH1-211ENST00000488809 CDK19Q9BWU1 502 aa9.5□□□□□ -0.89
PTCH1-211ENST00000488809 COL5A2P05997 1499 aaPredicted RBP9.5□□□□□ -0.89
PTCH1-211ENST00000488809 CASZ1Q86V15 1759 aa9.5□□□□□ -0.89
PTCH1-211ENST00000488809 RAB3GAP2Q9H2M9 1393 aa9.5□□□□□ -0.89
PTCH1-211ENST00000488809 PLEKHG3A1L390 1219 aa9.49□□□□□ -0.89
PTCH1-211ENST00000488809 USP19O94966 1318 aa9.49□□□□□ -0.89
PTCH1-211ENST00000488809 QRICH2Q9H0J4 1663 aa9.48□□□□□ -0.89
PTCH1-211ENST00000488809 PLSCR1O15162 318 aa9.48□□□□□ -0.89
PTCH1-211ENST00000488809 PPIP5K1Q6PFW1 1433 aa9.48□□□□□ -0.89
PTCH1-211ENST00000488809 GCP02774 474 aa9.47□□□□□ -0.89
PTCH1-211ENST00000488809 DDB1Q16531 1140 aa9.47□□□□□ -0.89
PTCH1-211ENST00000488809 RGPD5Q99666 1765 aa9.47□□□□□ -0.89
PTCH1-211ENST00000488809 SRPK2P78362 688 aaKnown RBP9.46□□□□□ -0.9
PTCH1-211ENST00000488809 CDCA7Q9BWT1 371 aaPredicted RBP9.46□□□□□ -0.9
PTCH1-211ENST00000488809 BCL11BQ9C0K0 894 aaPredicted RBP9.46□□□□□ -0.9
PTCH1-211ENST00000488809 KAT6BQ8WYB5 2073 aa9.46□□□□□ -0.9
PTCH1-211ENST00000488809 SLIT3O75094 1523 aa9.46□□□□□ -0.9
PTCH1-211ENST00000488809 MYOM1P52179 1685 aa9.45□□□□□ -0.9
PTCH1-211ENST00000488809 ZBTB7CA1YPR0 619 aa9.45□□□□□ -0.9
PTCH1-211ENST00000488809 TOM1L2Q6ZVM7 507 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms