RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 C19orf44Q9H6X5 657 aa17.22■□□□□ 0.35
VPS13D-205ENST00000473099 TTC21AQ8NDW8 1320 aa17.21■□□□□ 0.35
VPS13D-205ENST00000473099 SCAF1Q9H7N4 1312 aaKnown RBP17.21■□□□□ 0.35
VPS13D-205ENST00000473099 SHPRHQ149N8 1683 aa17.2■□□□□ 0.34
VPS13D-205ENST00000473099 TMEM94Q12767 1356 aa17.19■□□□□ 0.34
VPS13D-205ENST00000473099 NUTM2FA1L443 756 aa17.19■□□□□ 0.34
VPS13D-205ENST00000473099 NGDNQ8NEJ9 315 aaKnown RBP17.19■□□□□ 0.34
VPS13D-205ENST00000473099 LRRC7Q96NW7 1537 aa17.19■□□□□ 0.34
VPS13D-205ENST00000473099 SSH2Q76I76 1423 aa17.19■□□□□ 0.34
VPS13D-205ENST00000473099 PIK3C2AO00443 1686 aa17.18■□□□□ 0.34
VPS13D-205ENST00000473099 UBAP1LF5GYI3 381 aa17.18■□□□□ 0.34
VPS13D-205ENST00000473099 HNRNPUQ00839 825 aaKnown RBP eCLIP17.18■□□□□ 0.34
VPS13D-205ENST00000473099 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.18■□□□□ 0.34
VPS13D-205ENST00000473099 CFAP53Q96M91 514 aa17.18■□□□□ 0.34
VPS13D-205ENST00000473099 GGNBP2Q9H3C7 697 aa17.18■□□□□ 0.34
VPS13D-205ENST00000473099 TTC21BQ7Z4L5 1316 aa17.18■□□□□ 0.34
VPS13D-205ENST00000473099 PHF8Q9UPP1 1060 aa17.17■□□□□ 0.34
VPS13D-205ENST00000473099 MSH6P52701 1360 aa17.16■□□□□ 0.34
VPS13D-205ENST00000473099 WDR43Q15061 677 aaKnown RBP eCLIP17.16■□□□□ 0.34
VPS13D-205ENST00000473099 COG3Q96JB2 828 aa17.16■□□□□ 0.34
VPS13D-205ENST00000473099 AATKQ6ZMQ8 1374 aa17.15■□□□□ 0.34
VPS13D-205ENST00000473099 BLMP54132 1417 aaPredicted RBP17.15■□□□□ 0.34
VPS13D-205ENST00000473099 ATF3P18847 181 aa17.15■□□□□ 0.34
VPS13D-205ENST00000473099 MARF1Q9Y4F3 1742 aaKnown RBP17.15■□□□□ 0.34
VPS13D-205ENST00000473099 OVOS2A0A0J9YW53 1432 aa17.14■□□□□ 0.33
VPS13D-205ENST00000473099 OVOS2Q6IE36 1432 aa17.14■□□□□ 0.33
VPS13D-205ENST00000473099 CADPS2Q86UW7 1296 aa17.14■□□□□ 0.33
VPS13D-205ENST00000473099 PMFBP1Q8TBY8 1022 aa17.14■□□□□ 0.33
VPS13D-205ENST00000473099 ZBED9Q6R2W3 1325 aa17.14■□□□□ 0.33
VPS13D-205ENST00000473099 SMG6Q86US8 1419 aaKnown RBP17.13■□□□□ 0.33
VPS13D-205ENST00000473099 C1orf167Q5SNV9 1468 aa17.13■□□□□ 0.33
VPS13D-205ENST00000473099 MTHFSP49914 203 aa17.13■□□□□ 0.33
VPS13D-205ENST00000473099 USP31Q70CQ4 1352 aa17.13■□□□□ 0.33
VPS13D-205ENST00000473099 TRPM3Q9HCF6 1732 aaPredicted RBP17.13■□□□□ 0.33
VPS13D-205ENST00000473099 MST1RQ04912 1400 aa17.13■□□□□ 0.33
VPS13D-205ENST00000473099 TNNT2P45379 298 aaPredicted RBP17.12■□□□□ 0.33
VPS13D-205ENST00000473099 NME9Q86XW9 330 aa17.12■□□□□ 0.33
VPS13D-205ENST00000473099 RBM33Q96EV2 1170 aaKnown RBP17.12■□□□□ 0.33
VPS13D-205ENST00000473099 ESCO1Q5FWF5 840 aa17.11■□□□□ 0.33
VPS13D-205ENST00000473099 CDK12Q9NYV4 1490 aaPredicted RBP17.11■□□□□ 0.33
VPS13D-205ENST00000473099 COL3A1P02461 1466 aaPredicted RBP17.09■□□□□ 0.33
VPS13D-205ENST00000473099 LTN1O94822 1766 aa17.08■□□□□ 0.33
VPS13D-205ENST00000473099 PNPLA6Q8IY17 1366 aa17.08■□□□□ 0.32
VPS13D-205ENST00000473099 NUDCQ9Y266 331 aa17.08■□□□□ 0.32
VPS13D-205ENST00000473099 ALS2Q96Q42 1657 aa17.07■□□□□ 0.32
VPS13D-205ENST00000473099 TOM1O60784 492 aa17.07■□□□□ 0.32
VPS13D-205ENST00000473099 PSME1Q06323 249 aa17.07■□□□□ 0.32
VPS13D-205ENST00000473099 NGEFQ8N5V2 710 aa17.06■□□□□ 0.32
VPS13D-205ENST00000473099 ADAMTS8Q9UP79 889 aa17.06■□□□□ 0.32
VPS13D-205ENST00000473099 POLKQ9UBT6 870 aa17.05■□□□□ 0.32
VPS13D-205ENST00000473099 PHRF1Q9P1Y6 1649 aaKnown RBP17.04■□□□□ 0.32
VPS13D-205ENST00000473099 PIP4K2BP78356 416 aa17.04■□□□□ 0.32
VPS13D-205ENST00000473099 KIF24Q5T7B8 1368 aa17.03■□□□□ 0.32
VPS13D-205ENST00000473099 ORAI2Q96SN7 254 aa17.03■□□□□ 0.32
VPS13D-205ENST00000473099 ZRANB1Q9UGI0 708 aa17.03■□□□□ 0.32
VPS13D-205ENST00000473099 PEAK1Q9H792 1746 aa17.02■□□□□ 0.32
VPS13D-205ENST00000473099 DIAPH1O60610 1272 aaKnown RBP17.02■□□□□ 0.32
VPS13D-205ENST00000473099 NLRP6P59044 892 aa17.02■□□□□ 0.32
VPS13D-205ENST00000473099 ABTB2Q8N961 1025 aa17.02■□□□□ 0.32
VPS13D-205ENST00000473099 PNNQ9H307 717 aaKnown RBP17.02■□□□□ 0.32
VPS13D-205ENST00000473099 NPHP3Q7Z494 1330 aa17.01■□□□□ 0.31
VPS13D-205ENST00000473099 NHSL1Q5SYE7 1610 aa17.01■□□□□ 0.31
VPS13D-205ENST00000473099 PAK3O75914 559 aaPredicted RBP17.01■□□□□ 0.31
VPS13D-205ENST00000473099 PDE3BQ13370 1112 aa17■□□□□ 0.31
VPS13D-205ENST00000473099 SLIT3O75094 1523 aa17■□□□□ 0.31
VPS13D-205ENST00000473099 SBNO1A3KN83 1393 aa17■□□□□ 0.31
VPS13D-205ENST00000473099 FOXO3O43524 673 aa16.99■□□□□ 0.31
VPS13D-205ENST00000473099 KRT28Q7Z3Y7 464 aa16.99■□□□□ 0.31
VPS13D-205ENST00000473099 RGPD1P0DJD0 1748 aa16.99■□□□□ 0.31
VPS13D-205ENST00000473099 NCBP3Q53F19 620 aaKnown RBP16.98■□□□□ 0.31
VPS13D-205ENST00000473099 KCNH5Q8NCM2 988 aa16.98■□□□□ 0.31
VPS13D-205ENST00000473099 RUNDC1Q96C34 613 aa16.98■□□□□ 0.31
VPS13D-205ENST00000473099 PHF23Q9BUL5 403 aaPredicted RBP16.98■□□□□ 0.31
VPS13D-205ENST00000473099 EMILIN1Q9Y6C2 1016 aa16.98■□□□□ 0.31
VPS13D-205ENST00000473099 FLT4P35916 1363 aa16.98■□□□□ 0.31
VPS13D-205ENST00000473099 NFAT5O94916 1531 aa16.97■□□□□ 0.31
VPS13D-205ENST00000473099 CRYBG1Q9Y4K1 1723 aa16.97■□□□□ 0.31
VPS13D-205ENST00000473099 PPM1GO15355 546 aaPredicted RBP16.97■□□□□ 0.31
VPS13D-205ENST00000473099 U2AF1L5P0DN76 240 aaPredicted RBP16.97■□□□□ 0.31
VPS13D-205ENST00000473099 U2AF1Q01081 240 aaKnown RBP eCLIP16.97■□□□□ 0.31
VPS13D-205ENST00000473099 RTL1A6NKG5 1358 aa16.97■□□□□ 0.31
VPS13D-205ENST00000473099 RRS1Q15050 365 aaKnown RBP16.96■□□□□ 0.31
VPS13D-205ENST00000473099 SLAIN2Q9P270 581 aa16.96■□□□□ 0.31
VPS13D-205ENST00000473099 PXDNQ92626 1479 aa16.96■□□□□ 0.31
VPS13D-205ENST00000473099 MED1Q15648 1581 aaPredicted RBP16.95■□□□□ 0.3
VPS13D-205ENST00000473099 HSPA1LP34931 641 aa16.95■□□□□ 0.3
VPS13D-205ENST00000473099 TNS3Q68CZ2 1445 aa16.95■□□□□ 0.3
VPS13D-205ENST00000473099 DLG5Q8TDM6 1919 aa16.94■□□□□ 0.3
VPS13D-205ENST00000473099 U2SURPO15042 1029 aaKnown RBP16.94■□□□□ 0.3
VPS13D-205ENST00000473099 USP19O94966 1318 aa16.94■□□□□ 0.3
VPS13D-205ENST00000473099 MAP3K19Q56UN5 1328 aa16.94■□□□□ 0.3
VPS13D-205ENST00000473099 ARHGEF10O15013 1369 aa16.93■□□□□ 0.3
VPS13D-205ENST00000473099 FCHSD2O94868 740 aa16.93■□□□□ 0.3
VPS13D-205ENST00000473099 NEFMP07197 916 aa16.93■□□□□ 0.3
VPS13D-205ENST00000473099 FBLN1P23142 703 aa16.93■□□□□ 0.3
VPS13D-205ENST00000473099 ILDR2Q71H61 639 aa16.93■□□□□ 0.3
VPS13D-205ENST00000473099 BRINP3Q76B58 766 aa16.93■□□□□ 0.3
VPS13D-205ENST00000473099 IL13P35225 146 aa16.92■□□□□ 0.3
VPS13D-205ENST00000473099 ABCC6O95255 1503 aa16.91■□□□□ 0.3
VPS13D-205ENST00000473099 APAF1O14727 1248 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms