RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 TUSC1Q2TAM9 212 aa7.47□□□□□ -1.21
CSMD3-205ENST00000462254 RTL5Q5HYW3 569 aaPredicted RBP7.47□□□□□ -1.21
CSMD3-205ENST00000462254 USB1Q9BQ65 265 aaKnown RBP7.47□□□□□ -1.21
CSMD3-205ENST00000462254 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.47□□□□□ -1.21
CSMD3-205ENST00000462254 ATP1B4Q9UN42 357 aaPredicted RBP7.47□□□□□ -1.21
CSMD3-205ENST00000462254 CCDC9Q9Y3X0 531 aaKnown RBP7.47□□□□□ -1.21
CSMD3-205ENST00000462254 KIF21BO75037 1637 aa7.47□□□□□ -1.21
CSMD3-205ENST00000462254 KIF27Q86VH2 1401 aa7.46□□□□□ -1.21
CSMD3-205ENST00000462254 PPP1R18Q6NYC8 613 aa7.46□□□□□ -1.22
CSMD3-205ENST00000462254 FAM9AQ8IZU1 332 aaPredicted RBP7.46□□□□□ -1.22
CSMD3-205ENST00000462254 GAPVD1Q14C86 1478 aa7.45□□□□□ -1.22
CSMD3-205ENST00000462254 NUTM2BA6NNL0 878 aaPredicted RBP7.45□□□□□ -1.22
CSMD3-205ENST00000462254 NUTM2EB1AL46 878 aaPredicted RBP7.45□□□□□ -1.22
CSMD3-205ENST00000462254 CFAP99D6REC4 459 aa7.45□□□□□ -1.22
CSMD3-205ENST00000462254 PPEF1O14829 653 aaPredicted RBP7.45□□□□□ -1.22
CSMD3-205ENST00000462254 NUTM2DQ5VT03 806 aaPredicted RBP7.45□□□□□ -1.22
CSMD3-205ENST00000462254 PRPF38BQ5VTL8 546 aaKnown RBP7.45□□□□□ -1.22
CSMD3-205ENST00000462254 RETREG3Q86VR2 466 aa7.45□□□□□ -1.22
CSMD3-205ENST00000462254 NUTM2AQ8IVF1 878 aaPredicted RBP7.45□□□□□ -1.22
CSMD3-205ENST00000462254 PRR7Q8TB68 274 aa7.45□□□□□ -1.22
CSMD3-205ENST00000462254 PCMTD1Q96MG8 357 aaPredicted RBP7.45□□□□□ -1.22
CSMD3-205ENST00000462254 SLC6A16Q9GZN6 736 aa7.45□□□□□ -1.22
CSMD3-205ENST00000462254 ZBTB3Q9H5J0 574 aa7.45□□□□□ -1.22
CSMD3-205ENST00000462254 ERICH3Q5RHP9 1530 aa7.45□□□□□ -1.22
CSMD3-205ENST00000462254 TDRD9Q8NDG6 1382 aaKnown RBP7.45□□□□□ -1.22
CSMD3-205ENST00000462254 AQRO60306 1485 aaKnown RBP eCLIP7.44□□□□□ -1.22
CSMD3-205ENST00000462254 ZBTB7CA1YPR0 619 aa7.44□□□□□ -1.22
CSMD3-205ENST00000462254 ARID3AQ99856 593 aa7.44□□□□□ -1.22
CSMD3-205ENST00000462254 C1orf115Q9H7X2 142 aa7.44□□□□□ -1.22
CSMD3-205ENST00000462254 ADAMTS12P58397 1594 aa7.44□□□□□ -1.22
CSMD3-205ENST00000462254 CTTNBP2Q8WZ74 1663 aa7.44□□□□□ -1.22
CSMD3-205ENST00000462254 A0A0G2JS52 829 aa7.43□□□□□ -1.22
CSMD3-205ENST00000462254 MSS51Q4VC12 460 aa7.43□□□□□ -1.22
CSMD3-205ENST00000462254 CHD1O14646 1710 aa7.43□□□□□ -1.22
CSMD3-205ENST00000462254 SPDYE5A6NIY4 337 aa7.42□□□□□ -1.22
CSMD3-205ENST00000462254 RNF223E7ERA6 249 aa7.42□□□□□ -1.22
CSMD3-205ENST00000462254 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.42□□□□□ -1.22
CSMD3-205ENST00000462254 PRXQ9BXM0 1461 aa7.42□□□□□ -1.22
CSMD3-205ENST00000462254 DXOO77932 396 aaKnown RBP7.41□□□□□ -1.22
CSMD3-205ENST00000462254 PDIA4P13667 645 aaKnown RBP7.41□□□□□ -1.22
CSMD3-205ENST00000462254 MMP16P51512 607 aa7.41□□□□□ -1.22
CSMD3-205ENST00000462254 PPP2R2DQ66LE6 453 aa7.41□□□□□ -1.22
CSMD3-205ENST00000462254 IGF1RP08069 1367 aa7.41□□□□□ -1.22
CSMD3-205ENST00000462254 GRIN2BQ13224 1484 aa7.41□□□□□ -1.22
CSMD3-205ENST00000462254 JUNDP17535 347 aa7.4□□□□□ -1.22
CSMD3-205ENST00000462254 PLA2G2CQ5R387 149 aa7.4□□□□□ -1.22
CSMD3-205ENST00000462254 TSC1Q92574 1164 aa7.4□□□□□ -1.22
CSMD3-205ENST00000462254 SNAPC4Q5SXM2 1469 aa7.4□□□□□ -1.22
CSMD3-205ENST00000462254 RAPGEF2Q9Y4G8 1499 aa7.4□□□□□ -1.22
CSMD3-205ENST00000462254 GOLGA3Q08378 1498 aa7.39□□□□□ -1.23
CSMD3-205ENST00000462254 PER1O15534 1290 aaPredicted RBP7.39□□□□□ -1.23
CSMD3-205ENST00000462254 RFC5P40937 340 aa7.39□□□□□ -1.23
CSMD3-205ENST00000462254 MAGI1Q96QZ7 1491 aaPredicted RBP7.38□□□□□ -1.23
CSMD3-205ENST00000462254 GGCXP38435 758 aa7.38□□□□□ -1.23
CSMD3-205ENST00000462254 CTDSPL2Q05D32 466 aa7.38□□□□□ -1.23
CSMD3-205ENST00000462254 DESI1Q6ICB0 168 aa7.38□□□□□ -1.23
CSMD3-205ENST00000462254 EMID1Q96A84 441 aaPredicted RBP7.38□□□□□ -1.23
CSMD3-205ENST00000462254 FCF1Q9Y324 198 aaKnown RBP7.38□□□□□ -1.23
CSMD3-205ENST00000462254 CARMIL1Q5VZK9 1371 aa7.37□□□□□ -1.23
CSMD3-205ENST00000462254 LOC105371045A0A1W2PR82 267 aa7.37□□□□□ -1.23
CSMD3-205ENST00000462254 LYPD8Q6UX82 237 aa7.37□□□□□ -1.23
CSMD3-205ENST00000462254 ANKLE1Q8NAG6 615 aa7.37□□□□□ -1.23
CSMD3-205ENST00000462254 AP1G2O75843 785 aa7.36□□□□□ -1.23
CSMD3-205ENST00000462254 FHAD1B1AJZ9 1412 aa7.35□□□□□ -1.23
CSMD3-205ENST00000462254 APBB1O00213 710 aa7.35□□□□□ -1.23
CSMD3-205ENST00000462254 PTCRAQ6ISU1 281 aaPredicted RBP7.35□□□□□ -1.23
CSMD3-205ENST00000462254 CCDC24Q8N4L8 307 aa7.35□□□□□ -1.23
CSMD3-205ENST00000462254 LRRN4Q8WUT4 740 aa7.35□□□□□ -1.23
CSMD3-205ENST00000462254 NUDT12Q9BQG2 462 aa7.35□□□□□ -1.23
CSMD3-205ENST00000462254 SYNJ2O15056 1496 aa7.35□□□□□ -1.23
CSMD3-205ENST00000462254 CEP170Q5SW79 1584 aa7.34□□□□□ -1.23
CSMD3-205ENST00000462254 PTPRNQ16849 979 aa7.34□□□□□ -1.23
CSMD3-205ENST00000462254 HELBQ8NG08 1087 aaPredicted RBP7.34□□□□□ -1.23
CSMD3-205ENST00000462254 GRIN2AQ12879 1464 aa7.34□□□□□ -1.23
CSMD3-205ENST00000462254 ARID3CA6NKF2 412 aa7.33□□□□□ -1.24
CSMD3-205ENST00000462254 CCNYL3P0C7X3 344 aa7.33□□□□□ -1.24
CSMD3-205ENST00000462254 LIAT1Q6ZQX7 453 aa7.33□□□□□ -1.24
CSMD3-205ENST00000462254 EVA1BQ9NVM1 165 aa7.33□□□□□ -1.24
CSMD3-205ENST00000462254 MAP10Q9P2G4 905 aa7.33□□□□□ -1.24
CSMD3-205ENST00000462254 F12P00748 615 aaPredicted RBP7.32□□□□□ -1.24
CSMD3-205ENST00000462254 USP17L8P0C7I0 530 aa7.32□□□□□ -1.24
CSMD3-205ENST00000462254 FLIIQ13045 1269 aa7.32□□□□□ -1.24
CSMD3-205ENST00000462254 TMEM259Q4ZIN3 620 aa7.32□□□□□ -1.24
CSMD3-205ENST00000462254 HMX1Q9NP08 348 aaPredicted RBP7.32□□□□□ -1.24
CSMD3-205ENST00000462254 TNIKQ9UKE5 1360 aa7.32□□□□□ -1.24
CSMD3-205ENST00000462254 IQGAP2Q13576 1575 aa7.31□□□□□ -1.24
CSMD3-205ENST00000462254 EPS8L1Q8TE68 723 aa7.31□□□□□ -1.24
CSMD3-205ENST00000462254 PRKD2Q9BZL6 878 aa7.31□□□□□ -1.24
CSMD3-205ENST00000462254 SNRKQ9NRH2 765 aa7.31□□□□□ -1.24
CSMD3-205ENST00000462254 CTHP32929 405 aa7.3□□□□□ -1.24
CSMD3-205ENST00000462254 SLC19A1P41440 591 aa7.3□□□□□ -1.24
CSMD3-205ENST00000462254 KCNH2Q12809 1159 aa7.3□□□□□ -1.24
CSMD3-205ENST00000462254 NUP160Q12769 1436 aa7.29□□□□□ -1.24
CSMD3-205ENST00000462254 NR6A1Q15406 480 aa7.29□□□□□ -1.24
CSMD3-205ENST00000462254 SAMD9Q5K651 1589 aa7.29□□□□□ -1.24
CSMD3-205ENST00000462254 CEP162Q5TB80 1403 aa7.28□□□□□ -1.24
CSMD3-205ENST00000462254 SHROOM2Q13796 1616 aa7.28□□□□□ -1.24
CSMD3-205ENST00000462254 UNC93B1Q9H1C4 597 aa7.28□□□□□ -1.24
CSMD3-205ENST00000462254 CLASP1Q7Z460 1538 aa7.27□□□□□ -1.25
CSMD3-205ENST00000462254 ZBTB24O43167 697 aaPredicted RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms