RNA–Protein interactions for RNA: ENST00000450169.6

LSM5-208, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM5, Length 2,258 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-208ENST00000450169 PCDHB15Q9Y5E8 787 aa10.7□□□□□ -0.7
LSM5-208ENST00000450169 CHRM1P11229 460 aaPredicted RBP10.69□□□□□ -0.7
LSM5-208ENST00000450169 COL17A1Q9UMD9 1497 aaPredicted RBP10.69□□□□□ -0.7
LSM5-208ENST00000450169 ATP2B3Q16720 1220 aa10.69□□□□□ -0.7
LSM5-208ENST00000450169 RBSNQ9H1K0 784 aa10.69□□□□□ -0.7
LSM5-208ENST00000450169 CAMSAP2Q08AD1 1489 aa10.69□□□□□ -0.7
LSM5-208ENST00000450169 CDK11BP21127 795 aaKnown RBP10.68□□□□□ -0.7
LSM5-208ENST00000450169 RBM25P49756 843 aaKnown RBP10.68□□□□□ -0.7
LSM5-208ENST00000450169 RWDD1Q9H446 243 aaPredicted RBP10.68□□□□□ -0.7
LSM5-208ENST00000450169 CARMIL2Q6F5E8 1435 aa10.68□□□□□ -0.7
LSM5-208ENST00000450169 PLXNC1O60486 1568 aa10.68□□□□□ -0.7
LSM5-208ENST00000450169 ZSCAN23Q3MJ62 389 aa10.68□□□□□ -0.7
LSM5-208ENST00000450169 CLEC17AQ6ZS10 378 aa10.68□□□□□ -0.7
LSM5-208ENST00000450169 PRIMPOLQ96LW4 560 aa10.68□□□□□ -0.7
LSM5-208ENST00000450169 RSPH4AQ5TD94 716 aa10.67□□□□□ -0.7
LSM5-208ENST00000450169 CGNQ9P2M7 1197 aaKnown RBP10.67□□□□□ -0.7
LSM5-208ENST00000450169 SSFA2P28290 1259 aa10.67□□□□□ -0.7
LSM5-208ENST00000450169 PPP2R1AP30153 589 aa10.67□□□□□ -0.7
LSM5-208ENST00000450169 GTF2F1P35269 517 aaKnown RBP eCLIP10.67□□□□□ -0.7
LSM5-208ENST00000450169 HMGN5P82970 282 aaKnown RBP10.67□□□□□ -0.7
LSM5-208ENST00000450169 KIAA2012Q0VF49 1180 aa10.67□□□□□ -0.7
LSM5-208ENST00000450169 CAVIN1Q6NZI2 390 aaKnown RBP10.67□□□□□ -0.7
LSM5-208ENST00000450169 JARID2Q92833 1246 aaPredicted RBP10.67□□□□□ -0.7
LSM5-208ENST00000450169 ARHGAP31Q2M1Z3 1444 aa10.66□□□□□ -0.7
LSM5-208ENST00000450169 DNTTIP2Q5QJE6 756 aaKnown RBP10.66□□□□□ -0.7
LSM5-208ENST00000450169 TSC1Q92574 1164 aa10.66□□□□□ -0.7
LSM5-208ENST00000450169 CLEC11AQ9Y240 323 aa10.66□□□□□ -0.7
LSM5-208ENST00000450169 DISP3Q9P2K9 1392 aa10.66□□□□□ -0.7
LSM5-208ENST00000450169 ABCA8O94911 1581 aa10.66□□□□□ -0.7
LSM5-208ENST00000450169 PRG4Q92954 1404 aaPredicted RBP10.66□□□□□ -0.7
LSM5-208ENST00000450169 BAG4O95429 457 aaKnown RBP10.65□□□□□ -0.7
LSM5-208ENST00000450169 CCDC146Q8IYE0 955 aa10.65□□□□□ -0.7
LSM5-208ENST00000450169 PRIM1P49642 420 aaKnown RBP10.65□□□□□ -0.7
LSM5-208ENST00000450169 FAM135AQ9P2D6 1515 aa10.65□□□□□ -0.71
LSM5-208ENST00000450169 APAF1O14727 1248 aa10.64□□□□□ -0.71
LSM5-208ENST00000450169 FTSJ3Q8IY81 847 aaKnown RBP10.64□□□□□ -0.71
LSM5-208ENST00000450169 ABCC2Q92887 1545 aa10.64□□□□□ -0.71
LSM5-208ENST00000450169 KIF3AQ9Y496 699 aa10.63□□□□□ -0.71
LSM5-208ENST00000450169 SHROOM2Q13796 1616 aa10.63□□□□□ -0.71
LSM5-208ENST00000450169 TRPM1Q7Z4N2 1603 aa10.63□□□□□ -0.71
LSM5-208ENST00000450169 K7ELQ4 463 aaPredicted RBP10.63□□□□□ -0.71
LSM5-208ENST00000450169 NBPF1Q3BBV0 1214 aa10.63□□□□□ -0.71
LSM5-208ENST00000450169 ZNF771Q7L3S4 317 aaPredicted RBP10.63□□□□□ -0.71
LSM5-208ENST00000450169 TROQ12816 1431 aaPredicted RBP10.63□□□□□ -0.71
LSM5-208ENST00000450169 ERCC6L2Q5T890 1561 aa10.63□□□□□ -0.71
LSM5-208ENST00000450169 RLBP1P12271 317 aa10.62□□□□□ -0.71
LSM5-208ENST00000450169 MCTP1Q6DN14 999 aa10.62□□□□□ -0.71
LSM5-208ENST00000450169 PDCL2Q8N4E4 241 aa10.62□□□□□ -0.71
LSM5-208ENST00000450169 ZNF644Q9H582 1327 aaPredicted RBP10.62□□□□□ -0.71
LSM5-208ENST00000450169 ADCY10Q96PN6 1610 aa10.62□□□□□ -0.71
LSM5-208ENST00000450169 IGSF3O75054 1194 aa10.61□□□□□ -0.71
LSM5-208ENST00000450169 PTMAP06454 111 aaKnown RBP10.61□□□□□ -0.71
LSM5-208ENST00000450169 TESK2Q96S53 571 aa10.61□□□□□ -0.71
LSM5-208ENST00000450169 ERBINQ96RT1 1412 aa10.61□□□□□ -0.71
LSM5-208ENST00000450169 ZBTB7CA1YPR0 619 aa10.61□□□□□ -0.71
LSM5-208ENST00000450169 CD2BP2O95400 341 aaKnown RBP10.61□□□□□ -0.71
LSM5-208ENST00000450169 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.61□□□□□ -0.71
LSM5-208ENST00000450169 PIK3C2GO75747 1445 aa10.61□□□□□ -0.71
LSM5-208ENST00000450169 PPP1R37O75864 691 aa10.6□□□□□ -0.71
LSM5-208ENST00000450169 IRX5P78411 483 aaPredicted RBP10.6□□□□□ -0.71
LSM5-208ENST00000450169 NGEFQ8N5V2 710 aa10.6□□□□□ -0.71
LSM5-208ENST00000450169 BCL2L12Q9HB09 334 aa10.6□□□□□ -0.71
LSM5-208ENST00000450169 LMBRD1Q9NUN5 540 aa10.6□□□□□ -0.71
LSM5-208ENST00000450169 ADGBQ8N7X0 1667 aa10.6□□□□□ -0.71
LSM5-208ENST00000450169 PRAG1Q86YV5 1406 aa10.6□□□□□ -0.71
LSM5-208ENST00000450169 ATP10BO94823 1461 aa10.6□□□□□ -0.71
LSM5-208ENST00000450169 RARSP54136 660 aaKnown RBP10.6□□□□□ -0.71
LSM5-208ENST00000450169 GAS2L2Q8NHY3 880 aa10.6□□□□□ -0.71
LSM5-208ENST00000450169 KIF2CQ99661 725 aa10.6□□□□□ -0.71
LSM5-208ENST00000450169 MFRPQ9BY79 579 aa10.6□□□□□ -0.71
LSM5-208ENST00000450169 KNSTRNQ9Y448 316 aa10.6□□□□□ -0.71
LSM5-208ENST00000450169 KDM5DQ9BY66 1539 aa10.59□□□□□ -0.71
LSM5-208ENST00000450169 FAM177BA6PVY3 158 aa10.59□□□□□ -0.71
LSM5-208ENST00000450169 TMF1P82094 1093 aa10.59□□□□□ -0.71
LSM5-208ENST00000450169 LRSAM1Q6UWE0 723 aa10.59□□□□□ -0.71
LSM5-208ENST00000450169 PIBF1Q8WXW3 757 aa10.59□□□□□ -0.71
LSM5-208ENST00000450169 GPBP1L1Q9HC44 474 aaPredicted RBP10.59□□□□□ -0.71
LSM5-208ENST00000450169 TNNQ9UQP3 1299 aa10.59□□□□□ -0.71
LSM5-208ENST00000450169 U2AF2P26368 475 aaKnown RBP eCLIP10.59□□□□□ -0.71
LSM5-208ENST00000450169 SLC20A2Q08357 652 aa10.59□□□□□ -0.71
LSM5-208ENST00000450169 GPRASP1Q5JY77 1395 aa10.59□□□□□ -0.71
LSM5-208ENST00000450169 TESPA1A2RU30 521 aaPredicted RBP10.58□□□□□ -0.72
LSM5-208ENST00000450169 PRR29P0C7W0 189 aa10.58□□□□□ -0.72
LSM5-208ENST00000450169 ARHGEF1Q92888 912 aaKnown RBP10.58□□□□□ -0.72
LSM5-208ENST00000450169 FEZ1Q99689 392 aa10.58□□□□□ -0.72
LSM5-208ENST00000450169 PTPRGP23470 1445 aa10.58□□□□□ -0.72
LSM5-208ENST00000450169 PRDM15P57071 1507 aaPredicted RBP10.58□□□□□ -0.72
LSM5-208ENST00000450169 GPATCH8Q9UKJ3 1502 aaKnown RBP10.58□□□□□ -0.72
LSM5-208ENST00000450169 ITSN2Q9NZM3 1697 aa10.58□□□□□ -0.72
LSM5-208ENST00000450169 LAMC1P11047 1609 aa10.58□□□□□ -0.72
LSM5-208ENST00000450169 NOLC1Q14978 699 aaKnown RBP eCLIP10.58□□□□□ -0.72
LSM5-208ENST00000450169 MAGI2Q86UL8 1455 aa10.58□□□□□ -0.72
LSM5-208ENST00000450169 RBM27Q9P2N5 1060 aaKnown RBP10.58□□□□□ -0.72
LSM5-208ENST00000450169 CDC42BPAQ5VT25 1732 aa10.57□□□□□ -0.72
LSM5-208ENST00000450169 SYCE3A1L190 88 aa10.57□□□□□ -0.72
LSM5-208ENST00000450169 KCNJ4P48050 445 aa10.57□□□□□ -0.72
LSM5-208ENST00000450169 NUCB2P80303 420 aa10.57□□□□□ -0.72
LSM5-208ENST00000450169 DNAJC2Q99543 621 aaKnown RBP10.57□□□□□ -0.72
LSM5-208ENST00000450169 ADGRL2O95490 1459 aa10.57□□□□□ -0.72
LSM5-208ENST00000450169 KIF16BQ96L93 1317 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms