RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 NRXN1Q9ULB1 1477 aa14.82□□□□□ -0.04
SMPD4-208ENST00000439029 COL14A1Q05707 1796 aaKnown RBP14.81□□□□□ -0.04
SMPD4-208ENST00000439029 PRDM11Q9NQV5 511 aa14.81□□□□□ -0.04
SMPD4-208ENST00000439029 PARD3Q8TEW0 1356 aa14.81□□□□□ -0.04
SMPD4-208ENST00000439029 C1QTNF8P60827 252 aa14.8□□□□□ -0.04
SMPD4-208ENST00000439029 CHRNA2Q15822 529 aa14.8□□□□□ -0.04
SMPD4-208ENST00000439029 PPARGC1BQ86YN6 1023 aaKnown RBP14.8□□□□□ -0.04
SMPD4-208ENST00000439029 SPATA31A1Q5TZJ5 1347 aa14.8□□□□□ -0.04
SMPD4-208ENST00000439029 RREB1Q92766 1687 aa14.8□□□□□ -0.04
SMPD4-208ENST00000439029 IFT172Q9UG01 1749 aa14.8□□□□□ -0.04
SMPD4-208ENST00000439029 YTHDC2Q9H6S0 1430 aaKnown RBP14.78□□□□□ -0.04
SMPD4-208ENST00000439029 RRBP1Q9P2E9 1410 aaKnown RBP14.78□□□□□ -0.04
SMPD4-208ENST00000439029 PDE3BQ13370 1112 aa14.78□□□□□ -0.04
SMPD4-208ENST00000439029 PDGFDQ9GZP0 370 aaPredicted RBP14.78□□□□□ -0.04
SMPD4-208ENST00000439029 KNDC1Q76NI1 1749 aa14.76□□□□□ -0.05
SMPD4-208ENST00000439029 PAK3O75914 559 aaPredicted RBP14.76□□□□□ -0.05
SMPD4-208ENST00000439029 ZBTB7AO95365 584 aa14.76□□□□□ -0.05
SMPD4-208ENST00000439029 PRAM1Q96QH2 718 aa14.75□□□□□ -0.05
SMPD4-208ENST00000439029 SLC4A1APQ9BWU0 796 aaKnown RBP14.75□□□□□ -0.05
SMPD4-208ENST00000439029 KIAA0232Q92628 1395 aa14.74□□□□□ -0.05
SMPD4-208ENST00000439029 NRKQ7Z2Y5 1582 aa14.74□□□□□ -0.05
SMPD4-208ENST00000439029 ZC3H6P61129 1189 aaKnown RBP14.74□□□□□ -0.05
SMPD4-208ENST00000439029 ANO8Q9HCE9 1232 aaPredicted RBP14.74□□□□□ -0.05
SMPD4-208ENST00000439029 ATF5Q9Y2D1 282 aaPredicted RBP14.74□□□□□ -0.05
SMPD4-208ENST00000439029 TRPM3Q9HCF6 1732 aaPredicted RBP14.74□□□□□ -0.05
SMPD4-208ENST00000439029 GPRASP1Q5JY77 1395 aa14.73□□□□□ -0.05
SMPD4-208ENST00000439029 HIRIP3Q9BW71 556 aaPredicted RBP14.73□□□□□ -0.05
SMPD4-208ENST00000439029 ACIN1Q9UKV3 1341 aaKnown RBP14.72□□□□□ -0.05
SMPD4-208ENST00000439029 ALS2Q96Q42 1657 aa14.72□□□□□ -0.05
SMPD4-208ENST00000439029 EVA1CP58658 441 aa14.72□□□□□ -0.05
SMPD4-208ENST00000439029 NUTM2GQ5VZR2 741 aa14.72□□□□□ -0.05
SMPD4-208ENST00000439029 SIRT1Q96EB6 747 aa14.71□□□□□ -0.05
SMPD4-208ENST00000439029 POGKQ9P215 609 aa14.71□□□□□ -0.05
SMPD4-208ENST00000439029 PIK3C2GO75747 1445 aa14.7□□□□□ -0.06
SMPD4-208ENST00000439029 CFAP70Q5T0N1 1121 aa14.7□□□□□ -0.06
SMPD4-208ENST00000439029 LARP1Q6PKG0 1096 aaKnown RBP14.7□□□□□ -0.06
SMPD4-208ENST00000439029 FHDC1Q9C0D6 1143 aaPredicted RBP14.7□□□□□ -0.06
SMPD4-208ENST00000439029 MYOM1P52179 1685 aa14.7□□□□□ -0.06
SMPD4-208ENST00000439029 ANKRD30BQ9BXX2 1392 aa14.7□□□□□ -0.06
SMPD4-208ENST00000439029 PRR36Q9H6K5 1346 aa14.69□□□□□ -0.06
SMPD4-208ENST00000439029 PTGER2P43116 358 aa14.69□□□□□ -0.06
SMPD4-208ENST00000439029 BARGINQ6ZT62 677 aa14.69□□□□□ -0.06
SMPD4-208ENST00000439029 PTF1AQ7RTS3 328 aa14.69□□□□□ -0.06
SMPD4-208ENST00000439029 NGDNQ8NEJ9 315 aaKnown RBP14.69□□□□□ -0.06
SMPD4-208ENST00000439029 SYT17Q9BSW7 474 aa14.69□□□□□ -0.06
SMPD4-208ENST00000439029 ANKARQ7Z5J8 1434 aa14.68□□□□□ -0.06
SMPD4-208ENST00000439029 BCL11BQ9C0K0 894 aaPredicted RBP14.68□□□□□ -0.06
SMPD4-208ENST00000439029 CRYBG1Q9Y4K1 1723 aa14.68□□□□□ -0.06
SMPD4-208ENST00000439029 MINK1Q8N4C8 1332 aaPredicted RBP14.67□□□□□ -0.06
SMPD4-208ENST00000439029 SPATA31E1Q6ZUB1 1445 aa14.67□□□□□ -0.06
SMPD4-208ENST00000439029 TCP11L2Q8N4U5 519 aa14.67□□□□□ -0.06
SMPD4-208ENST00000439029 C14orf93Q9H972 538 aaKnown RBP14.67□□□□□ -0.06
SMPD4-208ENST00000439029 DHX57Q6P158 1386 aaKnown RBP14.67□□□□□ -0.06
SMPD4-208ENST00000439029 UTRNP46939 3433 aa14.67□□□□□ -0.06
SMPD4-208ENST00000439029 SSH2Q76I76 1423 aa14.66□□□□□ -0.06
SMPD4-208ENST00000439029 CASZ1Q86V15 1759 aa14.66□□□□□ -0.06
SMPD4-208ENST00000439029 CHD4Q14839 1912 aa14.66□□□□□ -0.06
SMPD4-208ENST00000439029 GIGYF1O75420 1035 aaPredicted RBP14.65□□□□□ -0.06
SMPD4-208ENST00000439029 PROM2Q8N271 834 aa14.63□□□□□ -0.07
SMPD4-208ENST00000439029 TRAK1Q9UPV9 953 aa14.63□□□□□ -0.07
SMPD4-208ENST00000439029 ZBTB7CA1YPR0 619 aa14.61□□□□□ -0.07
SMPD4-208ENST00000439029 PLSCR1O15162 318 aa14.61□□□□□ -0.07
SMPD4-208ENST00000439029 PHRF1Q9P1Y6 1649 aaKnown RBP14.61□□□□□ -0.07
SMPD4-208ENST00000439029 WASLO00401 505 aaPredicted RBP14.6□□□□□ -0.07
SMPD4-208ENST00000439029 GPR162Q16538 588 aa14.6□□□□□ -0.07
SMPD4-208ENST00000439029 STK32BQ9NY57 414 aa14.6□□□□□ -0.07
SMPD4-208ENST00000439029 PELP1Q8IZL8 1130 aaKnown RBP14.59□□□□□ -0.07
SMPD4-208ENST00000439029 OVOS2A0A0G2JMS6 1433 aa14.58□□□□□ -0.07
SMPD4-208ENST00000439029 OVOS2A0A0J9YW53 1432 aa14.58□□□□□ -0.07
SMPD4-208ENST00000439029 OVOS2Q6IE36 1432 aa14.58□□□□□ -0.07
SMPD4-208ENST00000439029 TULP4Q9NRJ4 1543 aa14.58□□□□□ -0.08
SMPD4-208ENST00000439029 KLHL34Q8N239 644 aa14.58□□□□□ -0.08
SMPD4-208ENST00000439029 SLC15A2Q16348 729 aa14.57□□□□□ -0.08
SMPD4-208ENST00000439029 ARXQ96QS3 562 aa14.57□□□□□ -0.08
SMPD4-208ENST00000439029 SGIP1Q9BQI5 828 aa14.57□□□□□ -0.08
SMPD4-208ENST00000439029 MTFR1LQ9H019 292 aa14.57□□□□□ -0.08
SMPD4-208ENST00000439029 DLC1Q96QB1 1528 aa14.56□□□□□ -0.08
SMPD4-208ENST00000439029 PEAK1Q9H792 1746 aa14.56□□□□□ -0.08
SMPD4-208ENST00000439029 TXNRD1Q16881 649 aa14.56□□□□□ -0.08
SMPD4-208ENST00000439029 THRAP3Q9Y2W1 955 aaKnown RBP14.56□□□□□ -0.08
SMPD4-208ENST00000439029 SBF2Q86WG5 1849 aa14.56□□□□□ -0.08
SMPD4-208ENST00000439029 EIF3AQ14152 1382 aaKnown RBP14.56□□□□□ -0.08
SMPD4-208ENST00000439029 PARP4Q9UKK3 1724 aaKnown RBP14.55□□□□□ -0.08
SMPD4-208ENST00000439029 DDB1Q16531 1140 aa14.55□□□□□ -0.08
SMPD4-208ENST00000439029 NUDT16Q96DE0 195 aaKnown RBP14.55□□□□□ -0.08
SMPD4-208ENST00000439029 C11orf95C9JLR9 678 aaPredicted RBP14.54□□□□□ -0.08
SMPD4-208ENST00000439029 ABTB2Q8N961 1025 aa14.54□□□□□ -0.08
SMPD4-208ENST00000439029 MARCH10Q8NA82 808 aaPredicted RBP14.54□□□□□ -0.08
SMPD4-208ENST00000439029 MPHOSPH9Q99550 1183 aa14.54□□□□□ -0.08
SMPD4-208ENST00000439029 RGPD3A6NKT7 1758 aaPredicted RBP14.54□□□□□ -0.08
SMPD4-208ENST00000439029 RGPD4Q7Z3J3 1758 aa14.54□□□□□ -0.08
SMPD4-208ENST00000439029 LMO7Q8WWI1 1683 aa14.53□□□□□ -0.08
SMPD4-208ENST00000439029 CEP350Q5VT06 3117 aa14.52□□□□□ -0.08
SMPD4-208ENST00000439029 COL5A2P05997 1499 aaPredicted RBP14.52□□□□□ -0.08
SMPD4-208ENST00000439029 ATP7BP35670 1465 aa14.52□□□□□ -0.08
SMPD4-208ENST00000439029 LRRC37A3O60309 1634 aa14.52□□□□□ -0.09
SMPD4-208ENST00000439029 CRB1P82279 1406 aa14.51□□□□□ -0.09
SMPD4-208ENST00000439029 ACEP12821 1306 aa14.51□□□□□ -0.09
SMPD4-208ENST00000439029 TOM1L2Q6ZVM7 507 aa14.51□□□□□ -0.09
SMPD4-208ENST00000439029 CPDO75976 1380 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms