RNA–Protein interactions for RNA: ENST00000396629.6

SCFD1-202, Transcript of sec1 family domain containing 1, humanhuman

TSL 2 BASIC

Gene SCFD1, Length 2,021 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-202ENST00000396629 CFAP70Q5T0N1 1121 aa12.64□□□□□ -0.39
SCFD1-202ENST00000396629 CAMKK2Q96RR4 588 aa12.64□□□□□ -0.39
SCFD1-202ENST00000396629 RREB1Q92766 1687 aa12.63□□□□□ -0.39
SCFD1-202ENST00000396629 SAFB2Q14151 953 aaKnown RBP eCLIP12.62□□□□□ -0.39
SCFD1-202ENST00000396629 MPHOSPH9Q99550 1183 aa12.62□□□□□ -0.39
SCFD1-202ENST00000396629 GPRASP1Q5JY77 1395 aa12.62□□□□□ -0.39
SCFD1-202ENST00000396629 ACIN1Q9UKV3 1341 aaKnown RBP12.61□□□□□ -0.39
SCFD1-202ENST00000396629 PARD3Q8TEW0 1356 aa12.61□□□□□ -0.39
SCFD1-202ENST00000396629 NUP188Q5SRE5 1749 aa12.61□□□□□ -0.39
SCFD1-202ENST00000396629 FAM196AQ6ZSG2 479 aa12.61□□□□□ -0.39
SCFD1-202ENST00000396629 POGKQ9P215 609 aa12.61□□□□□ -0.39
SCFD1-202ENST00000396629 SPATA31A1Q5TZJ5 1347 aa12.6□□□□□ -0.39
SCFD1-202ENST00000396629 TULP4Q9NRJ4 1543 aa12.6□□□□□ -0.39
SCFD1-202ENST00000396629 PRR36Q9H6K5 1346 aa12.6□□□□□ -0.39
SCFD1-202ENST00000396629 EIF3AQ14152 1382 aaKnown RBP12.59□□□□□ -0.39
SCFD1-202ENST00000396629 TRIM37O94972 964 aa12.59□□□□□ -0.39
SCFD1-202ENST00000396629 ADGRB1O14514 1584 aa12.59□□□□□ -0.39
SCFD1-202ENST00000396629 PHRF1Q9P1Y6 1649 aaKnown RBP12.59□□□□□ -0.39
SCFD1-202ENST00000396629 YY1P25490 414 aa12.58□□□□□ -0.4
SCFD1-202ENST00000396629 PRDM11Q9NQV5 511 aa12.58□□□□□ -0.4
SCFD1-202ENST00000396629 APBA3O96018 575 aa12.57□□□□□ -0.4
SCFD1-202ENST00000396629 ITSN1Q15811 1721 aa12.57□□□□□ -0.4
SCFD1-202ENST00000396629 HIRIP3Q9BW71 556 aaPredicted RBP12.56□□□□□ -0.4
SCFD1-202ENST00000396629 KIAA0232Q92628 1395 aa12.56□□□□□ -0.4
SCFD1-202ENST00000396629 WASLO00401 505 aaPredicted RBP12.55□□□□□ -0.4
SCFD1-202ENST00000396629 BARGINQ6ZT62 677 aa12.55□□□□□ -0.4
SCFD1-202ENST00000396629 NGDNQ8NEJ9 315 aaKnown RBP12.55□□□□□ -0.4
SCFD1-202ENST00000396629 MINK1Q8N4C8 1332 aaPredicted RBP12.55□□□□□ -0.4
SCFD1-202ENST00000396629 PAK3O75914 559 aaPredicted RBP12.54□□□□□ -0.4
SCFD1-202ENST00000396629 NBPF8Q3BBV2 869 aa12.54□□□□□ -0.4
SCFD1-202ENST00000396629 NBPF14Q5TI25 921 aa12.54□□□□□ -0.4
SCFD1-202ENST00000396629 TRAK1Q9UPV9 953 aa12.54□□□□□ -0.4
SCFD1-202ENST00000396629 CHRNA2Q15822 529 aa12.54□□□□□ -0.4
SCFD1-202ENST00000396629 STRN4Q9NRL3 753 aa12.54□□□□□ -0.4
SCFD1-202ENST00000396629 ATP7BP35670 1465 aa12.53□□□□□ -0.4
SCFD1-202ENST00000396629 PDE3BQ13370 1112 aa12.52□□□□□ -0.4
SCFD1-202ENST00000396629 SSH2Q76I76 1423 aa12.52□□□□□ -0.4
SCFD1-202ENST00000396629 LMO7Q8WWI1 1683 aa12.52□□□□□ -0.41
SCFD1-202ENST00000396629 SPON1Q9HCB6 807 aa12.52□□□□□ -0.41
SCFD1-202ENST00000396629 RGPD3A6NKT7 1758 aaPredicted RBP12.51□□□□□ -0.41
SCFD1-202ENST00000396629 RGPD4Q7Z3J3 1758 aa12.51□□□□□ -0.41
SCFD1-202ENST00000396629 PARP4Q9UKK3 1724 aaKnown RBP12.51□□□□□ -0.41
SCFD1-202ENST00000396629 NINLQ9Y2I6 1382 aa12.51□□□□□ -0.41
SCFD1-202ENST00000396629 KCNQ2O43526 872 aa12.51□□□□□ -0.41
SCFD1-202ENST00000396629 ZC3H6P61129 1189 aaKnown RBP12.51□□□□□ -0.41
SCFD1-202ENST00000396629 ARHGEF28Q8N1W1 1705 aaKnown RBP12.51□□□□□ -0.41
SCFD1-202ENST00000396629 CAMTA1Q9Y6Y1 1673 aa12.51□□□□□ -0.41
SCFD1-202ENST00000396629 NRKQ7Z2Y5 1582 aa12.5□□□□□ -0.41
SCFD1-202ENST00000396629 SBF2Q86WG5 1849 aa12.5□□□□□ -0.41
SCFD1-202ENST00000396629 TOPAZ1Q8N9V7 1692 aa12.5□□□□□ -0.41
SCFD1-202ENST00000396629 EVA1CP58658 441 aa12.5□□□□□ -0.41
SCFD1-202ENST00000396629 NUDT16Q96DE0 195 aaKnown RBP12.5□□□□□ -0.41
SCFD1-202ENST00000396629 USP35Q9P2H5 1018 aa12.5□□□□□ -0.41
SCFD1-202ENST00000396629 TCP11L2Q8N4U5 519 aa12.49□□□□□ -0.41
SCFD1-202ENST00000396629 PPP1R1BQ9UD71 204 aaPredicted RBP12.49□□□□□ -0.41
SCFD1-202ENST00000396629 PEAK1Q9H792 1746 aa12.49□□□□□ -0.41
SCFD1-202ENST00000396629 CASZ1Q86V15 1759 aa12.49□□□□□ -0.41
SCFD1-202ENST00000396629 DCAF8L1A6NGE4 600 aa12.49□□□□□ -0.41
SCFD1-202ENST00000396629 LARP1Q6PKG0 1096 aaKnown RBP12.49□□□□□ -0.41
SCFD1-202ENST00000396629 THRAP3Q9Y2W1 955 aaKnown RBP12.49□□□□□ -0.41
SCFD1-202ENST00000396629 POLR3AO14802 1390 aaPredicted RBP12.48□□□□□ -0.41
SCFD1-202ENST00000396629 CPDO75976 1380 aa12.48□□□□□ -0.41
SCFD1-202ENST00000396629 C11orf95C9JLR9 678 aaPredicted RBP12.48□□□□□ -0.41
SCFD1-202ENST00000396629 NUTM2GQ5VZR2 741 aa12.47□□□□□ -0.41
SCFD1-202ENST00000396629 USP19O94966 1318 aa12.46□□□□□ -0.42
SCFD1-202ENST00000396629 ACEP12821 1306 aa12.46□□□□□ -0.42
SCFD1-202ENST00000396629 STAC3Q96MF2 364 aa12.45□□□□□ -0.42
SCFD1-202ENST00000396629 PLEKHG3A1L390 1219 aa12.45□□□□□ -0.42
SCFD1-202ENST00000396629 PLSCR1O15162 318 aa12.45□□□□□ -0.42
SCFD1-202ENST00000396629 CDK19Q9BWU1 502 aa12.45□□□□□ -0.42
SCFD1-202ENST00000396629 KDM2AQ9Y2K7 1162 aa12.44□□□□□ -0.42
SCFD1-202ENST00000396629 COL5A2P05997 1499 aaPredicted RBP12.44□□□□□ -0.42
SCFD1-202ENST00000396629 DCAF11Q8TEB1 546 aa12.44□□□□□ -0.42
SCFD1-202ENST00000396629 LRRC37A3O60309 1634 aa12.43□□□□□ -0.42
SCFD1-202ENST00000396629 OVOS2A0A0G2JMS6 1433 aa12.43□□□□□ -0.42
SCFD1-202ENST00000396629 OVOS2A0A0J9YW53 1432 aa12.43□□□□□ -0.42
SCFD1-202ENST00000396629 OVOS2Q6IE36 1432 aa12.43□□□□□ -0.42
SCFD1-202ENST00000396629 ABTB2Q8N961 1025 aa12.43□□□□□ -0.42
SCFD1-202ENST00000396629 CCDC61Q9Y6R9 512 aa12.43□□□□□ -0.42
SCFD1-202ENST00000396629 WNK3Q9BYP7 1800 aa12.43□□□□□ -0.42
SCFD1-202ENST00000396629 ANO8Q9HCE9 1232 aaPredicted RBP12.42□□□□□ -0.42
SCFD1-202ENST00000396629 CRB1P82279 1406 aa12.42□□□□□ -0.42
SCFD1-202ENST00000396629 MYOM1P52179 1685 aa12.42□□□□□ -0.42
SCFD1-202ENST00000396629 GCP02774 474 aa12.42□□□□□ -0.42
SCFD1-202ENST00000396629 CHD4Q14839 1912 aa12.41□□□□□ -0.42
SCFD1-202ENST00000396629 NLRP13Q86W25 1043 aa12.41□□□□□ -0.42
SCFD1-202ENST00000396629 COL18A1P39060 1754 aa12.4□□□□□ -0.42
SCFD1-202ENST00000396629 AKAP12Q02952 1782 aa12.4□□□□□ -0.42
SCFD1-202ENST00000396629 BCL11BQ9C0K0 894 aaPredicted RBP12.4□□□□□ -0.42
SCFD1-202ENST00000396629 KIAA1210Q9ULL0 1709 aa12.39□□□□□ -0.43
SCFD1-202ENST00000396629 PTGER2P43116 358 aa12.39□□□□□ -0.43
SCFD1-202ENST00000396629 PROM2Q8N271 834 aa12.39□□□□□ -0.43
SCFD1-202ENST00000396629 ZNF784Q8NCA9 323 aaPredicted RBP12.39□□□□□ -0.43
SCFD1-202ENST00000396629 BRD4O60885 1362 aaPredicted RBP12.39□□□□□ -0.43
SCFD1-202ENST00000396629 BCL9O00512 1426 aa12.39□□□□□ -0.43
SCFD1-202ENST00000396629 PTF1AQ7RTS3 328 aa12.38□□□□□ -0.43
SCFD1-202ENST00000396629 PDGFDQ9GZP0 370 aaPredicted RBP12.38□□□□□ -0.43
SCFD1-202ENST00000396629 AATKQ6ZMQ8 1374 aa12.38□□□□□ -0.43
SCFD1-202ENST00000396629 SLIT3O75094 1523 aa12.38□□□□□ -0.43
SCFD1-202ENST00000396629 DDB1Q16531 1140 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms