RNA–Protein interactions for RNA: ENST00000370225.3

ABCA4-201, Transcript of ATP binding cassette subfamily A member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ABCA4, Length 7,309 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4-201ENST00000370225 SKOR2Q2VWA4 1001 aaPredicted RBP10.29□□□□□ -0.76
ABCA4-201ENST00000370225 THEMISQ8N1K5 641 aaPredicted RBP10.29□□□□□ -0.76
ABCA4-201ENST00000370225 ZC3H6P61129 1189 aaKnown RBP10.29□□□□□ -0.76
ABCA4-201ENST00000370225 CLASRPQ8N2M8 674 aaKnown RBP10.29□□□□□ -0.76
ABCA4-201ENST00000370225 CDK5RAP3Q96JB5 506 aa10.29□□□□□ -0.76
ABCA4-201ENST00000370225 HSP90AB2PQ58FF8 381 aa10.28□□□□□ -0.76
ABCA4-201ENST00000370225 FGD6Q6ZV73 1430 aa10.28□□□□□ -0.76
ABCA4-201ENST00000370225 CNTLNQ9NXG0 1405 aa10.28□□□□□ -0.76
ABCA4-201ENST00000370225 WWC2Q6AWC2 1192 aa10.28□□□□□ -0.76
ABCA4-201ENST00000370225 ZSCAN29Q8IWY8 852 aaPredicted RBP10.28□□□□□ -0.76
ABCA4-201ENST00000370225 SLC4A2P04920 1241 aa10.28□□□□□ -0.76
ABCA4-201ENST00000370225 SLC3A2P08195 630 aaKnown RBP10.28□□□□□ -0.76
ABCA4-201ENST00000370225 CCDC158Q5M9N0 1113 aa10.28□□□□□ -0.76
ABCA4-201ENST00000370225 IGF1RP08069 1367 aa10.28□□□□□ -0.76
ABCA4-201ENST00000370225 STK3Q13188 491 aa10.28□□□□□ -0.76
ABCA4-201ENST00000370225 ZNF530Q6P9A1 599 aaPredicted RBP10.28□□□□□ -0.76
ABCA4-201ENST00000370225 TCP11L2Q8N4U5 519 aa10.28□□□□□ -0.76
ABCA4-201ENST00000370225 PRDM11Q9NQV5 511 aa10.28□□□□□ -0.76
ABCA4-201ENST00000370225 EXOSC9Q06265 439 aaKnown RBP10.27□□□□□ -0.76
ABCA4-201ENST00000370225 SKIDA1Q1XH10 827 aa10.27□□□□□ -0.76
ABCA4-201ENST00000370225 TWISTNBQ3B726 338 aaPredicted RBP10.27□□□□□ -0.76
ABCA4-201ENST00000370225 NOB1Q9ULX3 412 aaKnown RBP10.27□□□□□ -0.76
ABCA4-201ENST00000370225 KRT18P05783 430 aaKnown RBP10.27□□□□□ -0.77
ABCA4-201ENST00000370225 PIBF1Q8WXW3 757 aa10.27□□□□□ -0.77
ABCA4-201ENST00000370225 OFD1O75665 1012 aa10.27□□□□□ -0.77
ABCA4-201ENST00000370225 HDGFL1Q5TGJ6 251 aa10.27□□□□□ -0.77
ABCA4-201ENST00000370225 OLFM4Q6UX06 510 aa10.27□□□□□ -0.77
ABCA4-201ENST00000370225 C22orf23Q9BZE7 217 aa10.27□□□□□ -0.77
ABCA4-201ENST00000370225 SLC12A5Q9H2X9 1139 aa10.27□□□□□ -0.77
ABCA4-201ENST00000370225 GNL3LQ9NVN8 582 aaKnown RBP10.27□□□□□ -0.77
ABCA4-201ENST00000370225 BRPF1P55201 1214 aaPredicted RBP10.27□□□□□ -0.77
ABCA4-201ENST00000370225 RRBP1Q9P2E9 1410 aaKnown RBP10.27□□□□□ -0.77
ABCA4-201ENST00000370225 FKBP4Q02790 459 aaKnown RBP eCLIP10.26□□□□□ -0.77
ABCA4-201ENST00000370225 NBPF1Q3BBV0 1214 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 MPHOSPH8Q99549 860 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 ANKLE2Q86XL3 938 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 CDCA7LQ96GN5 454 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 ZHX3Q9H4I2 956 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 PODXL2Q9NZ53 605 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 SPG7Q9UQ90 795 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 SCAPERQ9BY12 1400 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 FYCO1Q9BQS8 1478 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 CDC45O75419 566 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 ADAMTS2O95450 1211 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 PSMA5P28066 241 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 CCDC7Q96M83 1385 aa10.26□□□□□ -0.77
ABCA4-201ENST00000370225 NUP133Q8WUM0 1156 aa10.25□□□□□ -0.77
ABCA4-201ENST00000370225 NCOA2Q15596 1464 aa10.25□□□□□ -0.77
ABCA4-201ENST00000370225 BTBD11A6QL63 1104 aa10.25□□□□□ -0.77
ABCA4-201ENST00000370225 CHMP4BP1P59074 171 aa10.25□□□□□ -0.77
ABCA4-201ENST00000370225 SDF4Q9BRK5 362 aa10.25□□□□□ -0.77
ABCA4-201ENST00000370225 SYNJ2O15056 1496 aa10.25□□□□□ -0.77
ABCA4-201ENST00000370225 FMNL2Q96PY5 1086 aa10.25□□□□□ -0.77
ABCA4-201ENST00000370225 IFT57Q9NWB7 429 aa10.25□□□□□ -0.77
ABCA4-201ENST00000370225 ZNF219Q9P2Y4 722 aaPredicted RBP10.24□□□□□ -0.77
ABCA4-201ENST00000370225 GNAI2P04899 355 aa10.24□□□□□ -0.77
ABCA4-201ENST00000370225 GNAI3P08754 354 aa10.24□□□□□ -0.77
ABCA4-201ENST00000370225 CCDC57Q2TAC2 916 aa10.24□□□□□ -0.77
ABCA4-201ENST00000370225 PPP2R1AP30153 589 aa10.24□□□□□ -0.77
ABCA4-201ENST00000370225 MIS18AQ9NYP9 233 aa10.24□□□□□ -0.77
ABCA4-201ENST00000370225 NESP48681 1621 aa10.23□□□□□ -0.77
ABCA4-201ENST00000370225 GSE1Q14687 1217 aa10.23□□□□□ -0.77
ABCA4-201ENST00000370225 MPHOSPH10O00566 681 aaKnown RBP10.23□□□□□ -0.77
ABCA4-201ENST00000370225 SETQ01105 290 aaPredicted RBP10.23□□□□□ -0.77
ABCA4-201ENST00000370225 GPS2Q13227 327 aa10.23□□□□□ -0.77
ABCA4-201ENST00000370225 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.23□□□□□ -0.77
ABCA4-201ENST00000370225 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.23□□□□□ -0.77
ABCA4-201ENST00000370225 RNF214Q8ND24 703 aa10.23□□□□□ -0.77
ABCA4-201ENST00000370225 CAGE1Q8TC20 777 aa10.23□□□□□ -0.77
ABCA4-201ENST00000370225 RTEL1-TNFRSF6BF6WH68 1400 aa10.23□□□□□ -0.77
ABCA4-201ENST00000370225 CHMP5Q9NZZ3 219 aa10.22□□□□□ -0.77
ABCA4-201ENST00000370225 PAXIP1Q6ZW49 1069 aaPredicted RBP10.22□□□□□ -0.77
ABCA4-201ENST00000370225 CCDC69A6NI79 296 aa10.22□□□□□ -0.77
ABCA4-201ENST00000370225 SMC2O95347 1197 aa10.22□□□□□ -0.77
ABCA4-201ENST00000370225 RUFY1Q96T51 708 aa10.22□□□□□ -0.77
ABCA4-201ENST00000370225 LRRC9Q6ZRR7 1453 aa10.22□□□□□ -0.77
ABCA4-201ENST00000370225 PTCD1O75127 700 aaKnown RBP10.22□□□□□ -0.77
ABCA4-201ENST00000370225 NEK4P51957 841 aa10.22□□□□□ -0.77
ABCA4-201ENST00000370225 RAI14Q9P0K7 980 aa10.22□□□□□ -0.77
ABCA4-201ENST00000370225 MYCNP04198 464 aaPredicted RBP10.21□□□□□ -0.77
ABCA4-201ENST00000370225 USHBP1Q8N6Y0 703 aa10.21□□□□□ -0.77
ABCA4-201ENST00000370225 GRIN2BQ13224 1484 aa10.21□□□□□ -0.77
ABCA4-201ENST00000370225 MATR3P43243 847 aaKnown RBP eCLIP10.21□□□□□ -0.77
ABCA4-201ENST00000370225 BCAR3O75815 825 aa10.21□□□□□ -0.77
ABCA4-201ENST00000370225 CFTRP13569 1480 aa10.21□□□□□ -0.77
ABCA4-201ENST00000370225 CALRP27797 417 aaKnown RBP10.21□□□□□ -0.78
ABCA4-201ENST00000370225 NUCB2P80303 420 aa10.21□□□□□ -0.78
ABCA4-201ENST00000370225 ERC1Q8IUD2 1116 aa10.21□□□□□ -0.78
ABCA4-201ENST00000370225 AACSQ86V21 672 aa10.21□□□□□ -0.78
ABCA4-201ENST00000370225 MAGEC2Q9UBF1 373 aaPredicted RBP10.2□□□□□ -0.78
ABCA4-201ENST00000370225 USP5P45974 858 aa10.2□□□□□ -0.78
ABCA4-201ENST00000370225 NAT10Q9H0A0 1025 aaKnown RBP10.2□□□□□ -0.78
ABCA4-201ENST00000370225 ERBINQ96RT1 1412 aa10.2□□□□□ -0.78
ABCA4-201ENST00000370225 SYCP1Q15431 976 aa10.2□□□□□ -0.78
ABCA4-201ENST00000370225 ZNF771Q7L3S4 317 aaPredicted RBP10.2□□□□□ -0.78
ABCA4-201ENST00000370225 TXLNAP40222 546 aa10.2□□□□□ -0.78
ABCA4-201ENST00000370225 TDO2P48775 406 aa10.19□□□□□ -0.78
ABCA4-201ENST00000370225 NACAP1Q9BZK3 213 aa10.19□□□□□ -0.78
ABCA4-201ENST00000370225 LRP2BPQ9P2M1 347 aa10.19□□□□□ -0.78
ABCA4-201ENST00000370225 MNS1Q8NEH6 495 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 254.2 ms