RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 NRXN1Q9ULB1 1477 aa12.11□□□□□ -0.47
UPF2-202ENST00000357604 C11orf95C9JLR9 678 aaPredicted RBP12.11□□□□□ -0.47
UPF2-202ENST00000357604 JCADQ9P266 1359 aa12.1□□□□□ -0.47
UPF2-202ENST00000357604 SPATA31A6Q5VVP1 1343 aa12.1□□□□□ -0.47
UPF2-202ENST00000357604 NSD3Q9BZ95 1437 aa12.1□□□□□ -0.47
UPF2-202ENST00000357604 TATP17735 454 aaPredicted RBP12.1□□□□□ -0.47
UPF2-202ENST00000357604 TULP4Q9NRJ4 1543 aa12.1□□□□□ -0.47
UPF2-202ENST00000357604 SBNO2Q9Y2G9 1366 aa12.1□□□□□ -0.47
UPF2-202ENST00000357604 KIF7Q2M1P5 1343 aa12.1□□□□□ -0.47
UPF2-202ENST00000357604 PDE3BQ13370 1112 aa12.1□□□□□ -0.47
UPF2-202ENST00000357604 DIAPH1O60610 1272 aaKnown RBP12.09□□□□□ -0.47
UPF2-202ENST00000357604 SIGLEC1Q9BZZ2 1709 aa12.09□□□□□ -0.47
UPF2-202ENST00000357604 C8orf37Q96NL8 207 aa12.09□□□□□ -0.47
UPF2-202ENST00000357604 CDCA7Q9BWT1 371 aaPredicted RBP12.09□□□□□ -0.47
UPF2-202ENST00000357604 SPG7Q9UQ90 795 aa12.09□□□□□ -0.47
UPF2-202ENST00000357604 SLC12A5Q9H2X9 1139 aa12.08□□□□□ -0.47
UPF2-202ENST00000357604 EDC4Q6P2E9 1401 aaKnown RBP12.08□□□□□ -0.47
UPF2-202ENST00000357604 CDC42BPGQ6DT37 1551 aa12.08□□□□□ -0.47
UPF2-202ENST00000357604 TTC21BQ7Z4L5 1316 aa12.08□□□□□ -0.48
UPF2-202ENST00000357604 MYBBP1AQ9BQG0 1328 aaKnown RBP12.08□□□□□ -0.48
UPF2-202ENST00000357604 ATP7BP35670 1465 aa12.08□□□□□ -0.48
UPF2-202ENST00000357604 PLEKHG3A1L390 1219 aa12.08□□□□□ -0.48
UPF2-202ENST00000357604 NEFLP07196 543 aa12.08□□□□□ -0.48
UPF2-202ENST00000357604 TRPM1Q7Z4N2 1603 aa12.07□□□□□ -0.48
UPF2-202ENST00000357604 SBNO1A3KN83 1393 aa12.07□□□□□ -0.48
UPF2-202ENST00000357604 HSP90AB1P08238 724 aaKnown RBP12.07□□□□□ -0.48
UPF2-202ENST00000357604 CANXP27824 592 aaKnown RBP12.07□□□□□ -0.48
UPF2-202ENST00000357604 GGNBP2Q9H3C7 697 aa12.07□□□□□ -0.48
UPF2-202ENST00000357604 PLEKHH1Q9ULM0 1364 aa12.07□□□□□ -0.48
UPF2-202ENST00000357604 TECPR2O15040 1411 aa12.07□□□□□ -0.48
UPF2-202ENST00000357604 PLEKHO1Q53GL0 409 aaPredicted RBP12.07□□□□□ -0.48
UPF2-202ENST00000357604 U2AF1L5P0DN76 240 aaPredicted RBP12.06□□□□□ -0.48
UPF2-202ENST00000357604 U2AF1Q01081 240 aaKnown RBP eCLIP12.06□□□□□ -0.48
UPF2-202ENST00000357604 BRINP3Q76B58 766 aa12.06□□□□□ -0.48
UPF2-202ENST00000357604 LRRC7Q96NW7 1537 aa12.05□□□□□ -0.48
UPF2-202ENST00000357604 ORAI2Q96SN7 254 aa12.05□□□□□ -0.48
UPF2-202ENST00000357604 C1orf167Q5SNV9 1468 aa12.05□□□□□ -0.48
UPF2-202ENST00000357604 KIF1AQ12756 1690 aa12.04□□□□□ -0.48
UPF2-202ENST00000357604 ZC3H6P61129 1189 aaKnown RBP12.04□□□□□ -0.48
UPF2-202ENST00000357604 TNS3Q68CZ2 1445 aa12.04□□□□□ -0.48
UPF2-202ENST00000357604 FAM9BQ8IZU0 186 aa12.04□□□□□ -0.48
UPF2-202ENST00000357604 QRICH2Q9H0J4 1663 aa12.03□□□□□ -0.48
UPF2-202ENST00000357604 DISP3Q9P2K9 1392 aa12.03□□□□□ -0.48
UPF2-202ENST00000357604 USP21Q9UK80 565 aa12.02□□□□□ -0.48
UPF2-202ENST00000357604 TRPC5Q9UL62 973 aaPredicted RBP12.02□□□□□ -0.48
UPF2-202ENST00000357604 NWD1Q149M9 1564 aa12.02□□□□□ -0.49
UPF2-202ENST00000357604 GAS2L2Q8NHY3 880 aa12.02□□□□□ -0.49
UPF2-202ENST00000357604 PTPRUQ92729 1446 aa12.02□□□□□ -0.49
UPF2-202ENST00000357604 PELP1Q8IZL8 1130 aaKnown RBP12.01□□□□□ -0.49
UPF2-202ENST00000357604 KNDC1Q76NI1 1749 aa12.01□□□□□ -0.49
UPF2-202ENST00000357604 NME9Q86XW9 330 aa12.01□□□□□ -0.49
UPF2-202ENST00000357604 NPHP1O15259 732 aa12□□□□□ -0.49
UPF2-202ENST00000357604 TTC5Q8N0Z6 440 aa12□□□□□ -0.49
UPF2-202ENST00000357604 YTHDC1Q96MU7 727 aaKnown RBP12□□□□□ -0.49
UPF2-202ENST00000357604 ITSN1Q15811 1721 aa12□□□□□ -0.49
UPF2-202ENST00000357604 CCER2I3L3R5 266 aa12□□□□□ -0.49
UPF2-202ENST00000357604 DCAF8L1A6NGE4 600 aa11.99□□□□□ -0.49
UPF2-202ENST00000357604 HSPA1LP34931 641 aa11.99□□□□□ -0.49
UPF2-202ENST00000357604 ASXL1Q8IXJ9 1541 aa11.99□□□□□ -0.49
UPF2-202ENST00000357604 EXOC5O00471 708 aa11.99□□□□□ -0.49
UPF2-202ENST00000357604 AMOTQ4VCS5 1084 aa11.99□□□□□ -0.49
UPF2-202ENST00000357604 RXRBP28702 533 aa11.98□□□□□ -0.49
UPF2-202ENST00000357604 NGEFQ8N5V2 710 aa11.98□□□□□ -0.49
UPF2-202ENST00000357604 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.98□□□□□ -0.49
UPF2-202ENST00000357604 ZBTB47Q9UFB7 747 aaPredicted RBP11.98□□□□□ -0.49
UPF2-202ENST00000357604 SPATA31A3Q5VYP0 1347 aa11.98□□□□□ -0.49
UPF2-202ENST00000357604 USP35Q9P2H5 1018 aa11.98□□□□□ -0.49
UPF2-202ENST00000357604 A0A1W2PP64 1363 aa11.98□□□□□ -0.49
UPF2-202ENST00000357604 MYO5BQ9ULV0 1848 aa11.97□□□□□ -0.49
UPF2-202ENST00000357604 ANKRD24Q8TF21 1146 aa11.97□□□□□ -0.49
UPF2-202ENST00000357604 TEFQ10587 303 aa11.97□□□□□ -0.49
UPF2-202ENST00000357604 RTL1A6NKG5 1358 aa11.96□□□□□ -0.49
UPF2-202ENST00000357604 GCP02774 474 aa11.96□□□□□ -0.49
UPF2-202ENST00000357604 USP6P35125 1406 aa11.96□□□□□ -0.49
UPF2-202ENST00000357604 MST1RQ04912 1400 aa11.96□□□□□ -0.49
UPF2-202ENST00000357604 IFT172Q9UG01 1749 aa11.96□□□□□ -0.49
UPF2-202ENST00000357604 LAS1LQ9Y4W2 734 aaKnown RBP11.96□□□□□ -0.49
UPF2-202ENST00000357604 FLT4P35916 1363 aa11.96□□□□□ -0.5
UPF2-202ENST00000357604 ARXQ96QS3 562 aa11.96□□□□□ -0.5
UPF2-202ENST00000357604 SYTL4Q96C24 671 aaPredicted RBP11.95□□□□□ -0.5
UPF2-202ENST00000357604 BTG4Q9NY30 223 aa11.95□□□□□ -0.5
UPF2-202ENST00000357604 PNISRQ8TF01 805 aaKnown RBP11.95□□□□□ -0.5
UPF2-202ENST00000357604 MYH16Q9H6N6 1097 aa11.94□□□□□ -0.5
UPF2-202ENST00000357604 THRAP3Q9Y2W1 955 aaKnown RBP11.94□□□□□ -0.5
UPF2-202ENST00000357604 POLR3AO14802 1390 aaPredicted RBP11.94□□□□□ -0.5
UPF2-202ENST00000357604 UNC5CLQ8IV45 518 aa11.94□□□□□ -0.5
UPF2-202ENST00000357604 TESK2Q96S53 571 aa11.94□□□□□ -0.5
UPF2-202ENST00000357604 TCP11L2Q8N4U5 519 aa11.93□□□□□ -0.5
UPF2-202ENST00000357604 IP6K1Q92551 441 aa11.93□□□□□ -0.5
UPF2-202ENST00000357604 QTRT2Q9H974 415 aaKnown RBP11.93□□□□□ -0.5
UPF2-202ENST00000357604 KIF24Q5T7B8 1368 aa11.93□□□□□ -0.5
UPF2-202ENST00000357604 RRS1Q15050 365 aaKnown RBP11.93□□□□□ -0.5
UPF2-202ENST00000357604 TMX4Q9H1E5 349 aaPredicted RBP11.93□□□□□ -0.5
UPF2-202ENST00000357604 IL2RBP14784 551 aa11.92□□□□□ -0.5
UPF2-202ENST00000357604 ADGRB1O14514 1584 aa11.92□□□□□ -0.5
UPF2-202ENST00000357604 ADGRB2O60241 1585 aa11.92□□□□□ -0.5
UPF2-202ENST00000357604 PPP2R1AP30153 589 aa11.92□□□□□ -0.5
UPF2-202ENST00000357604 MTHFSP49914 203 aa11.92□□□□□ -0.5
UPF2-202ENST00000357604 CABP4P57796 275 aa11.92□□□□□ -0.5
UPF2-202ENST00000357604 DDB1Q16531 1140 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 124.6 ms